Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00295 ATGAGTTGCAACGGTTGCAGAGTGCTTCGAAAGGGATGCAGCGAAGCTTGTGTTTTAAGGTCAAGTCTTCATTGGATTGATTCCCCGGAAGCTCAAGGCAACGCTACTCTGTTTCTCGCTAAATTTTTCGGCCGTAGTGATCTTTTGTCCTTTATCTCCGCCGTTCCTTATCATCAAAGACCTGCTTTGTTTCAGTCTCTGTTATTCGAAGCTTGTGGTCGCACAGTTAACCCAGTTAGCGGCGCCGTTGGTCTCTTGTCTAGTGGGAACTGGCACGTCTGTCAGGCGGCGGCGGATACCATTCTCAACGGCGGTGTTCTCAGACCAATACCCGGAATCGAAATTTCTGGGAATCCTACGCCTAACCTTGATGATTCATCGTTTACTTTTAATAACGATGTCTGGACAACCACCACACACAATCTTCAATTTTACCCATCTACTCCGTCTGATTTCCGGTGCCTTCCTGATCTCGGTCTCAACAGAACGAAGAAGCATCCGTTGGAGAATCGGCGGTCTCTTGATTCCGAAGAGTCGGTCATGACTAGCTTCGGAAGCGGCGATCTTGGCGAGCAACGGAAAGAAACGAAGCTCTTGAACTTATTCGTGTGA 612 48.37 MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQRPALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAADTILNGGVLRPIPGIEISGNPTPNLDDSSFTFNNDVWTTTTHNLQFYPSTPSDFRCLPDLGLNRTKKHPLENRRSLDSEESVMTSFGSGDLGEQRKETKLLNLFV 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1922289 1923596 + MELO3C016808.2.1 Cme07g00295 332311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00295 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 39-LIKE 1 203 - -
Cme07g00295 203 Pfam Lateral organ boundaries (LOB) domain 2 99 IPR004883 -
Cme07g00295 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 203 - -
Cme07g00295 203 MobiDBLite consensus disorder prediction 166 188 - -
Cme07g00295 203 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00295 Cme-Chr7:1922289 Cme10g00257 Cme-Chr10:1686542 5.00E-47 dispersed
Cme07g00295 Cme-Chr7:1922289 Cme08g00636 Cme-Chr8:4118183 2.07E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41610 PF03195 LOB 1.60E-23 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00295 - - csv:101208953 393.66