Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme07g00308 | ATGGCGGATAAGGAGAATATATTTCGATTCACCAGAGGTTCTAAGAAGAGAGCCGCCGACGCTGCTGCTGCTACCCTCGACGACCGCTCTACTAACAAGAGGAGAGTCGTTCTTGGTGAGCTTCCTATTTTACAGAATGCTTCTTCTTCCGTCGATCGTAAGTCCAGGTCTAGAGCCACCAGGCATAGACGGAGAGTAAAATCGAAGGACACTGCTGGCACAAGTGCTGCTGCTGAAATCAATACACTTCCCGAAGCCGAAGGTGATGTCAAGTTATCTGATGAGGGCAATTCTGAAGACCCGCAAATGTGCAGGGTTTACGCTACTGATATTTATGAATATCTTCGTGCAATGGAGACTGATCCAAGAAGAAGACCCTTACCAGATTACATCGGGAGGGTACAAAATGATATTAGTGCCAATATGAGGGGGATTCTGGTGGATTGGTTGGTTGAAGTTGCAGAAGAATACAAACTAGTTTCAGATACTCTTTACCTCTCTATTTCATATGTTGACAGATACTTATCCCTAAATGCAATCAGCAGGCAAAAACTCCAGTTGGTGGGCGTTTCTGCTATGCTCATTGCTTCAAAGTATGAAGAAATCAGTCCTCCGCATGTTGAAGAATTTGTTTATATCACAGACAATACCTACAATAGAGAAGAGGTGGTTGAGATGGAGGCTGAAATATTGAAGTCATTGGAATTTGAACTTGGAAATCCCACGATAAAGACCTTTTTAAGGAGATTCACATTGGTTGCTCAAGAGACTTATGAGTTTAATACCTTGCAATTTGAATTCTTGGGCTACTATCTTGCTGAGTTAAGCCTACTAGACTACAACTGTGTTAAATTCTTACCGTCTCTCGTTGCTGCATCTGTTACATTTCTAGCACGATTTATGATTCAATCCAAGAAGCATCCATGGACCTCCAGATTGGAGCATTTTACTGGATATAAGCCAGCTGATATGAAGGATTGCATTCTACTTGTACATGATTTATACCTTAGCAGAAGAGGAGGCGCTTTGTCAGCTATAAGGGAGAAATACAAACAGCACAAGTTCAAATTTGTGTCTGTAATGCCTTCACCTCCAGAGATTCCAATTCCGTATTTTGAAGATGTTAGAATATGA | 1134 | 41.71 | MADKENIFRFTRGSKKRAADAAAATLDDRSTNKRRVVLGELPILQNASSSVDRKSRSRATRHRRRVKSKDTAGTSAAAEINTLPEAEGDVKLSDEGNSEDPQMCRVYATDIYEYLRAMETDPRRRPLPDYIGRVQNDISANMRGILVDWLVEVAEEYKLVSDTLYLSISYVDRYLSLNAISRQKLQLVGVSAMLIASKYEEISPPHVEEFVYITDNTYNREEVVEMEAEILKSLEFELGNPTIKTFLRRFTLVAQETYEFNTLQFEFLGYYLAELSLLDYNCVKFLPSLVAASVTFLARFMIQSKKHPWTSRLEHFTGYKPADMKDCILLVHDLYLSRRGGALSAIREKYKQHKFKFVSVMPSPPEIPIPYFEDVRI | 377 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 1981391 | 1986568 | + | MELO3C016796.2.1 | Cme07g00308 | 332324 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme07g00308 | 377 | Pfam | Cyclin, N-terminal domain | 110 | 238 | IPR006671 | - | |
| Cme07g00308 | 377 | Gene3D | - | 124 | 239 | - | - | |
| Cme07g00308 | 377 | ProSitePatterns | Cyclins signature. | 143 | 174 | IPR006671 | - | |
| Cme07g00308 | 377 | PIRSF | Cyclin_A_B_D_E | 4 | 368 | IPR039361 | - | |
| Cme07g00308 | 377 | SUPERFAMILY | Cyclin-like | 99 | 238 | IPR036915 | - | |
| Cme07g00308 | 377 | MobiDBLite | consensus disorder prediction | 47 | 75 | - | - | |
| Cme07g00308 | 377 | SMART | cyclin_7 | 148 | 232 | IPR013763 | - | |
| Cme07g00308 | 377 | SMART | cyclin_7 | 245 | 333 | IPR013763 | - | |
| Cme07g00308 | 377 | Pfam | Cyclin, C-terminal domain | 241 | 364 | IPR004367 | - | |
| Cme07g00308 | 377 | CDD | CYCLIN | 241 | 332 | IPR013763 | - | |
| Cme07g00308 | 377 | PANTHER | CYCLIN-A3-1-RELATED | 25 | 375 | - | - | |
| Cme07g00308 | 377 | Gene3D | - | 110 | 360 | - | - | |
| Cme07g00308 | 377 | SMART | Cyclin_C_2 | 241 | 364 | IPR004367 | - | |
| Cme07g00308 | 377 | CDD | CYCLIN | 142 | 231 | IPR013763 | - | |
| Cme07g00308 | 377 | SUPERFAMILY | Cyclin-like | 241 | 366 | IPR036915 | - | |
| Cme07g00308 | 377 | PANTHER | CYCLINS | 25 | 375 | IPR039361 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme03g00509 | Cme-Chr3:7597299 | Cme07g00308 | Cme-Chr7:1981391 | 9.20E-96 | dispersed | |
| Cme03g01666 | Cme-Chr3:25418164 | Cme07g00308 | Cme-Chr7:1981391 | 2.69E-90 | dispersed | |
| Cme04g00381 | Cme-Chr4:3058212 | Cme07g00308 | Cme-Chr7:1981391 | 5.19E-99 | dispersed | |
| Cme07g00308 | Cme-Chr7:1981391 | Cme08g00990 | Cme-Chr8:6469717 | 2.23E-50 | dispersed | |
| Cme08g01425 | Cme-Chr8:12648898 | Cme07g00308 | Cme-Chr7:1981391 | 2.79E-47 | dispersed | |
| Cme01g00101 | Cme-Chr1:705414 | Cme07g00308 | Cme-Chr7:1981391 | 1.38E-99 | wgd | |
| Cme03g02080 | Cme-Chr3:28205221 | Cme07g00308 | Cme-Chr7:1981391 | 1.25E-166 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme07g00308 | K06627 | - | csv:101207493 | 700.664 |