Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00327 ATGGAAGGAGAAGTTTGCTCCTCTGTAAATTCATCATCCCCAAAGAGGAAGCAACGGCATGATGATCAGAATCATCTCCAACAAGAAAAGCCTTACAGAGGAATACGTATGAGGAAGTGGGGAAAGTGGGTTGCGGAAATCAGAGAACCCAACAAACGCTCCAGGATTTGGCTTGGTTCATACACAACCCCCGTCGCTGCCGCTAGAGCTTACGACACCGCTGTCTTCTATCTCCGTGGGCCCACCGCTCGACTTAACTTCCCAGATTTGATGTTCGAAACCGACCAGCTTCACGACATGTCCGCCGCCTCCATACGCAAACGAGCCACCGAAGTCGGCGCTAGGGTTGACGCCATCCAGACCTCTCTCCACGCCTCTAATTCCGCCGGTACTCAAGTTTCCGATAAGCCCGATTTAAACGAATACCCCAACCCTGAAACCTCAGACGACGATTAA 456 51.54 MEGEVCSSVNSSSPKRKQRHDDQNHLQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPDLMFETDQLHDMSAASIRKRATEVGARVDAIQTSLHASNSAGTQVSDKPDLNEYPNPETSDDD 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2085146 2086729 - MELO3C016780.2.1 Cme07g00327 332343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00327 151 MobiDBLite consensus disorder prediction 14 31 - -
Cme07g00327 151 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700|GO:0006355
Cme07g00327 151 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 9 149 - -
Cme07g00327 151 MobiDBLite consensus disorder prediction 123 151 - -
Cme07g00327 151 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Cme07g00327 151 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Cme07g00327 151 CDD AP2 32 90 IPR001471 GO:0003700|GO:0006355
Cme07g00327 151 MobiDBLite consensus disorder prediction 1 31 - -
Cme07g00327 151 Pfam AP2 domain 32 80 IPR001471 GO:0003700|GO:0006355
Cme07g00327 151 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Cme07g00327 151 PRINTS Ethylene responsive element binding protein signature 70 90 IPR001471 GO:0003700|GO:0006355
Cme07g00327 151 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Cme07g00327 151 MobiDBLite consensus disorder prediction 123 138 - -
Cme07g00327 151 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 9 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00001 Cme-Chr3:28335 Cme07g00327 Cme-Chr7:2085146 2.31E-24 dispersed
Cme03g01376 Cme-Chr3:23253482 Cme07g00327 Cme-Chr7:2085146 1.37E-27 dispersed
Cme07g00162 Cme-Chr7:1068636 Cme07g00327 Cme-Chr7:2085146 9.53E-27 dispersed
Cme07g00327 Cme-Chr7:2085146 Cme08g00586 Cme-Chr8:3731857 2.35E-50 dispersed
Cme03g00717 Cme-Chr3:13034319 Cme07g00327 Cme-Chr7:2085146 2.06E-28 transposed
Cme05g00716 Cme-Chr5:8372399 Cme07g00327 Cme-Chr7:2085146 9.45E-23 transposed
Cme09g01837 Cme-Chr9:22611159 Cme07g00327 Cme-Chr7:2085146 6.67E-23 transposed
Cme03g02066 Cme-Chr3:28145674 Cme07g00327 Cme-Chr7:2085146 1.72E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41612 PF00847 AP2 2.20E-11 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00327 K09286 - csv:101219005 296.975