Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00345 TGTTCTTCCTTCTCTCTCTCTTTCTGTTTCTCTCTTCACCATCTCCAATTTTGTGAAATTTGTACACCAAATATAACTGAGGATCAGATCGGGATTGAATTGGATCAGGTCGGAGATTTTTTTTTATTCTTTAATCCTATGGAAAATGATGATTTAAAATCGGAAGATCAGATGGAGATTATGATGATGATGCAACAAATGGAAAAAATCCCTGAATTTTATAATGATTTCTCACCGCCATCCTCTGATTTCAGCTCAACCACCACCGATAACCCACATTGCCATTTGGATTCCTCTTCATCGCCTCCATTATTCATCAACAACAACAACAGCAACAACAACCCACCTTATAATTTCCCCCAACAATCTACTGTTCCATTCCCGGGAACCTCCCCTTCACGGTGGCGAAACTCTGGTAGTTGCGAAACCGAGAGTTTACAGAAACAAAGGTCGGTAGCGGCTATGAGGGAGATGATATTCAGAATAGCAGTGATGCAACCAATTCACATAGACCCAGAAGCCGTGAAGCCACCAAAAAGAAGAAACGTGAAGATTTCAACTGACCCACAAAGTGTAGCGGCTCGACATAGGAGAGAAAGAATTAGCGAAAGAATTAGAATACTTCAAAGATTAGTCCCTGGAGGTACTAAAATGGACACTGCTTCTATGTTGGATGAAGCTATTCATTATGTTAAATTCTTAAAAACCCAAGTTCAGTCTCTTGAAAGAGCCGCCGTTTCCACCGGGAACCGCCCAATCACCGGTGGTGGTGCACCTAGCGTTGGGTTCCCTTTGGAAATGTCATCCGGGAGCTACATCCCTAATCATCAATCCCAACCTTGA 843 42.35 CSSFSLSFCFSLHHLQFCEICTPNITEDQIGIELDQVGDFFLFFNPMENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSTTTDNPHCHLDSSSSPPLFINNNNSNNNPPYNFPQQSTVPFPGTSPSRWRNSGSCETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAVSTGNRPITGGGAPSVGFPLEMSSGSYIPNHQSQP 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2214088 2215091 + MELO3C016763.2.1 Cme07g00345 332361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00345 280 CDD bHLH_AtIND_like 186 242 - -
Cme07g00345 280 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 47 276 - -
Cme07g00345 280 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 47 276 IPR045843 GO:0003700|GO:0006355
Cme07g00345 280 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 190 245 IPR036638 GO:0046983
Cme07g00345 280 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 234 IPR011598 GO:0046983
Cme07g00345 280 MobiDBLite consensus disorder prediction 80 116 - -
Cme07g00345 280 Gene3D - 188 251 IPR036638 GO:0046983
Cme07g00345 280 SMART finulus 191 240 IPR011598 GO:0046983
Cme07g00345 280 Pfam Helix-loop-helix DNA-binding domain 195 234 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00345 Cme-Chr7:2214088 Cme07g00293 Cme-Chr7:1901015 1.29E-21 dispersed
Cme01g02870 Cme-Chr1:35499951 Cme07g00345 Cme-Chr7:2214088 3.90E-30 transposed
Cme08g01078 Cme-Chr8:7087227 Cme07g00345 Cme-Chr7:2214088 1.94E-36 transposed
Cme08g02188 Cme-Chr8:27903362 Cme07g00345 Cme-Chr7:2214088 7.86E-21 transposed
Cme11g00295 Cme-Chr11:3162208 Cme07g00345 Cme-Chr7:2214088 4.62E-45 transposed
Cme03g02055 Cme-Chr3:28033407 Cme07g00345 Cme-Chr7:2214088 2.37E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41616 PF00010 HLH 2.00E-06 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00345 - - csv:101204124 376.326