Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme07g00345 | TGTTCTTCCTTCTCTCTCTCTTTCTGTTTCTCTCTTCACCATCTCCAATTTTGTGAAATTTGTACACCAAATATAACTGAGGATCAGATCGGGATTGAATTGGATCAGGTCGGAGATTTTTTTTTATTCTTTAATCCTATGGAAAATGATGATTTAAAATCGGAAGATCAGATGGAGATTATGATGATGATGCAACAAATGGAAAAAATCCCTGAATTTTATAATGATTTCTCACCGCCATCCTCTGATTTCAGCTCAACCACCACCGATAACCCACATTGCCATTTGGATTCCTCTTCATCGCCTCCATTATTCATCAACAACAACAACAGCAACAACAACCCACCTTATAATTTCCCCCAACAATCTACTGTTCCATTCCCGGGAACCTCCCCTTCACGGTGGCGAAACTCTGGTAGTTGCGAAACCGAGAGTTTACAGAAACAAAGGTCGGTAGCGGCTATGAGGGAGATGATATTCAGAATAGCAGTGATGCAACCAATTCACATAGACCCAGAAGCCGTGAAGCCACCAAAAAGAAGAAACGTGAAGATTTCAACTGACCCACAAAGTGTAGCGGCTCGACATAGGAGAGAAAGAATTAGCGAAAGAATTAGAATACTTCAAAGATTAGTCCCTGGAGGTACTAAAATGGACACTGCTTCTATGTTGGATGAAGCTATTCATTATGTTAAATTCTTAAAAACCCAAGTTCAGTCTCTTGAAAGAGCCGCCGTTTCCACCGGGAACCGCCCAATCACCGGTGGTGGTGCACCTAGCGTTGGGTTCCCTTTGGAAATGTCATCCGGGAGCTACATCCCTAATCATCAATCCCAACCTTGA | 843 | 42.35 | CSSFSLSFCFSLHHLQFCEICTPNITEDQIGIELDQVGDFFLFFNPMENDDLKSEDQMEIMMMMQQMEKIPEFYNDFSPPSSDFSSTTTDNPHCHLDSSSSPPLFINNNNSNNNPPYNFPQQSTVPFPGTSPSRWRNSGSCETESLQKQRSVAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAVSTGNRPITGGGAPSVGFPLEMSSGSYIPNHQSQP | 280 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2214088 | 2215091 | + | MELO3C016763.2.1 | Cme07g00345 | 332361 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme07g00345 | 280 | CDD | bHLH_AtIND_like | 186 | 242 | - | - | |
Cme07g00345 | 280 | PANTHER | BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN | 47 | 276 | - | - | |
Cme07g00345 | 280 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 47 | 276 | IPR045843 | GO:0003700|GO:0006355 | |
Cme07g00345 | 280 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 190 | 245 | IPR036638 | GO:0046983 | |
Cme07g00345 | 280 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 185 | 234 | IPR011598 | GO:0046983 | |
Cme07g00345 | 280 | MobiDBLite | consensus disorder prediction | 80 | 116 | - | - | |
Cme07g00345 | 280 | Gene3D | - | 188 | 251 | IPR036638 | GO:0046983 | |
Cme07g00345 | 280 | SMART | finulus | 191 | 240 | IPR011598 | GO:0046983 | |
Cme07g00345 | 280 | Pfam | Helix-loop-helix DNA-binding domain | 195 | 234 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme07g00345 | Cme-Chr7:2214088 | Cme07g00293 | Cme-Chr7:1901015 | 1.29E-21 | dispersed | |
Cme01g02870 | Cme-Chr1:35499951 | Cme07g00345 | Cme-Chr7:2214088 | 3.90E-30 | transposed | |
Cme08g01078 | Cme-Chr8:7087227 | Cme07g00345 | Cme-Chr7:2214088 | 1.94E-36 | transposed | |
Cme08g02188 | Cme-Chr8:27903362 | Cme07g00345 | Cme-Chr7:2214088 | 7.86E-21 | transposed | |
Cme11g00295 | Cme-Chr11:3162208 | Cme07g00345 | Cme-Chr7:2214088 | 4.62E-45 | transposed | |
Cme03g02055 | Cme-Chr3:28033407 | Cme07g00345 | Cme-Chr7:2214088 | 2.37E-44 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41616 | PF00010 | HLH | 2.00E-06 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme07g00345 | - | - | csv:101204124 | 376.326 |