Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00488 ATGGATTTCCTCCATGGCTTACCTCCTCTCAAAAGGCTCAGAATCCTTCAAGAACAAGAACAAAATCGTCAGAAGGAGGACCAATCGCTTGATTCTTGTTCCCTCCCAGCGAAGAAGCGAAAGGAGTCTCGTGATTCTTCATTACTCCTAATTCCTGACGCTTCTCCTTACTGCTTGCCCACCAAGAAAAGGGTGCGGGCCTTTCACCCTGATTTTGCACCGGAGTCATTGGATCTCAATGTTGAATACAAGCCACCTCTGGAGGAAGAATCCATATCGAAATCTGAATTAGAGGGACAGAAAAAGGAGGAAGAGGATAAGGAAAAGGAAAAGGAAAAGGAAGTTTCTGATGTTGAAATGGAGATTCAAGAGATTGAAACAGTCCAAGATGAAGAGGAAGATGATGGGATTCTTTGTGCGATTTGTCAAAGCACAGATGGGGATCCTTCAGATCCAATTGTATTCTGTGATGGATGTGATTTAATGGTACACGCTTCATGTTATGGTAATCCTCTTGTAAAGAGTATACCAGAAGGAGATTGGTTCTGTAGCCAATGCTTAGCTTCTTCGTCTTCCGAGACGGGGAAGAAGGTTACAGAAACACCATTTTCATGCTGCCTTTGTCCTCTTAAAGGAGGAGCCATGAAGCCGACGAACGACGGCCAATGGGCTCATATTGTTTGTGGACTCTATGTTCCTGAGGTGTTCTTTGAGGACCCAGAAGGGAGAGAAGGGATTGATTGCTCGAAGATTCTGAAGAGGAGATGGAAAACTAAATGTTATATCTGCAGAACTTCTAGAGGTTGTTCTATTGACTGCTCAGAGCCTAAATGTAGTTTGGCTTTTCATGTTACTTGCGGGTTGGAGGAGGATCTATGTATTGAGTACCAAGAAGGAAGAAGATCTGGTGCTATTGTAGCTGGGTTTTGTAGAAACCATACAGACTTGTGGAAGAAGCAACAACTAACAGGGAAATTCAAGATAGTGGCTAGAGATGAAGGTAAGTTGTAG 1011 43.42 MDFLHGLPPLKRLRILQEQEQNRQKEDQSLDSCSLPAKKRKESRDSSLLLIPDASPYCLPTKKRVRAFHPDFAPESLDLNVEYKPPLEEESISKSELEGQKKEEEDKEKEKEKEVSDVEMEIQEIETVQDEEEDDGILCAICQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKSIPEGDWFCSQCLASSSSETGKKVTETPFSCCLCPLKGGAMKPTNDGQWAHIVCGLYVPEVFFEDPEGREGIDCSKILKRRWKTKCYICRTSRGCSIDCSEPKCSLAFHVTCGLEEDLCIEYQEGRRSGAIVAGFCRNHTDLWKKQQLTGKFKIVARDEGKL 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4006642 4008420 - MELO3C025676.2.1 Cme07g00488 332504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00488 336 SUPERFAMILY FYVE/PHD zinc finger 129 192 IPR011011 -
Cme07g00488 336 MobiDBLite consensus disorder prediction 83 118 - -
Cme07g00488 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 316 IPR013083 -
Cme07g00488 336 SMART PHD_3 259 314 IPR001965 -
Cme07g00488 336 SMART PHD_3 138 187 IPR001965 -
Cme07g00488 336 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 98 332 - -
Cme07g00488 336 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 4 94 - -
Cme07g00488 336 PANTHER PHD FINGER PROTEINS 4 94 - -
Cme07g00488 336 PANTHER PHD FINGER PROTEINS 98 332 - -
Cme07g00488 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 193 IPR013083 -
Cme07g00488 336 CDD PHD_BRPF_JADE_like 138 186 - -
Cme07g00488 336 MobiDBLite consensus disorder prediction 17 47 - -
Cme07g00488 336 ProSiteProfiles Zinc finger PHD-type profile. 136 189 IPR019787 -
Cme07g00488 336 Pfam PHD-zinc-finger like domain 204 301 - -
Cme07g00488 336 Pfam PHD-finger 139 187 IPR019787 -
Cme07g00488 336 Coils Coil 87 135 - -
Cme07g00488 336 ProSiteProfiles Extended PHD (ePHD) domain profile. 202 314 IPR034732 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00488 Cme-Chr7:4006642 Cme09g00868 Cme-Chr9:11634330 8.75E-10 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41619 PF13832 zf-HC5HC2H_2 4.20E-29 CL0390 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00488 K11380 - csv:101203744 622.468