Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00504 CAAATCAGAGCTGCGACAAATAATTTTGACATTTCCAATAAGATAGGAGAAGGTGGTTTTGGACCTGTTTATAAGGGTATTCTTCTAGATGGTACCATGATTGCGGTGAAGCAATTTTCTGCGAAATCAAGGCAAGGAAACCGTGAATTTGTGAATGAGATAGGCTTGATATCTTCTTTGAACCACCCAAATCTAGTTAAACTGCATGGATGTTGTACCCAAGCAGATCAACTTTTGCTTGTATATGAATATATGGAAAATAACAGTCTTGCGCAAGCTCTCTTTGGATCTCAAGAATGCCAATTAAAATTGAATTGGCCAACAAGGAAAAAGATTTGTATTGGCATAGCCAAAGGTTTAACTTTTCTGCACGAGGAGTCAAGGTTGAAGATTGTTCACCGAGATATCAAAGGTACTAATGTGTTGTTAGATAAAAATCTCAACCCAAAGATTTCCGACTTTGGTTTGGCCAAGCTTGATGAAGAGGAAAACACTCATATTAGCACCCGGATTGCTGGAACGTTTGGATATATGGCACCAGAATATGCGACACGAGGCTATCTAATGGAGAAAGCAGATGTTTATAGCTTTGGTATCGTGGCATTAGAAATAGTTAGTGGAAGGAGCAACACTATACATCGGTCAAAGGATAAATGCCTTTGTCTTCTTGATTGGGTAACTTGA 684 38.74 QIRAATNNFDISNKIGEGGFGPVYKGILLDGTMIAVKQFSAKSRQGNREFVNEIGLISSLNHPNLVKLHGCCTQADQLLLVYEYMENNSLAQALFGSQECQLKLNWPTRKKICIGIAKGLTFLHEESRLKIVHRDIKGTNVLLDKNLNPKISDFGLAKLDEEENTHISTRIAGTFGYMAPEYATRGYLMEKADVYSFGIVALEIVSGRSNTIHRSKDKCLCLLDWVT 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4173782 4174770 + MELO3C025667.2.1 Cme07g00504 332520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00504 227 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 226 - -
Cme07g00504 227 PIRSF ILK 1 220 - -
Cme07g00504 227 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 226 - -
Cme07g00504 227 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
Cme07g00504 227 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Cme07g00504 227 Pfam Protein kinase domain 10 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00504 227 Gene3D Transferase(Phosphotransferase) domain 1 85 227 - -
Cme07g00504 227 SMART serkin_6 9 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00504 227 SUPERFAMILY Protein kinase-like (PK-like) 3 216 IPR011009 -
Cme07g00504 227 ProSiteProfiles Protein kinase domain profile. 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00504 Cme-Chr7:4173782 Cme07g00510 Cme-Chr7:4228632 1.16E-128 dispersed
Cme07g00502 Cme-Chr7:4150769 Cme07g00504 Cme-Chr7:4173782 1.53E-122 proximal
Cme05g00309 Cme-Chr5:2296795 Cme07g00504 Cme-Chr7:4173782 1.34E-113 transposed
Cme07g01343 Cme-Chr7:18904904 Cme07g00504 Cme-Chr7:4173782 4.33E-125 transposed
Cme12g01256 Cme-Chr12:20676044 Cme07g00504 Cme-Chr7:4173782 1.06E-120 transposed
Cme07g00504 Cme-Chr7:4173782 Cme07g01380 Cme-Chr7:19355066 1.39E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65001 PF00069 Pkinase 8.40E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00504 - - ming:122088670 382.874