Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00514 ATGGAGTTTAATGGTAGTATATATGAAGGGGATGATACTCAAGGTGGCAAAGCAAGTTTCTTTATCTCATCACAGAAATGGGGTTACGCTTCAACTGGTGTTTCTTTCCTGAGTGATAAACTTCCTTTCAAGCTATCATCTACCAGTAATTCCTCTTTTTCTTCTTCACCAACCCTTTATTCCACTGCTAGAGTTTCCCCTCTTTCTCTCAACTACTATGGATTTTGTCTCATCAGTGGAAGTTACTATGTCAAGCTTCACTTTACTGAAATTTTGTTTACTGCTGACCAAACTTATGCCAGCCTCAGGAGGCGTATTTTCGATATCTCAATTCAAGGAAAGTTGATTAAGGACTTTAACATAATGGAAGAAGCTGGAGGTGTTGACTTCCATGTCAAAACTAATGTGCAAACTAGAAGGCTACCGGCTGGAGCTATTGCTGGCAGGGTTGTTGTTGGTATTTTCATCTTTGTCGTCCTAGTTTTTGTGCTTCGACGGAAAGGTTATTTAGGTGGAAGGGAAACTGAAGACGACGACAAATCAAAGCAGCCACCAACAACTTTGACTCTGCAAATAAAATTGGGGAGAGAAGCATTGGTCCTGTCTACAAGATTCTCTATCGTTAAAGGAGTACTATCAGATGGAACTTCCATTGCTGTAAAACAACTATCTTCTAAATCAAGACAAGGGAATCGTGAGTTCATCACAGAAGTTGGGATGACTTCTGGATTACAACATCCAAACCTTAATAATAATCTTGCTCGTGCACTTTTTAGCCTTGAGAAGCATTGTTTGCATTTGGACTGGCCAATAAGAATGAAGATATGTGTGGGAATAGCAAAGGGGTTGGCTTACCTTCATGAAGAATCTAGATTGAAAATTGTTCATAGAGATACAAAGGCTACTAATGTTCTACTTGATGAAAACTTGAATGCCAAGATCTCTGACTTTGGATTGGCTAAGCTTCACGAAGAGGCTTATGTCCTACAAGAAGGGAACTTACTTGAACTTGTTGATCTAAATCTTGGCCCTCATTACTCAAGAGGTTATGAGGATGCTCCATATCGCTCTCATATGCACAAACTTGTCTCTAAGTCTCAGACCATCCATGTCTTTGTCTGGTTAGCATGCTTGAAGGTAAAACTATGGCTGAAGTATCAAACATCAAGAGCAACACGGCTGAAGAGCAACACGGCTGAACGAGATGCAAGGTTCAAAGCTTTTGATAAGAAGTTGTCACGAGATAGCATGACAAGCATTTCAACCTTGTCGCAATTGCAAGGTATTGACTCATCATCTTCTTCTACTCAAAACAAAGACGATGCTCGAGAGTATTCAACAACAATAAGCCTCTTTTCAGATTCATTCAAATGA 1374 39.81 MEFNGSIYEGDDTQGGKASFFISSQKWGYASTGVSFLSDKLPFKLSSTSNSSFSSSPTLYSTARVSPLSLNYYGFCLISGSYYVKLHFTEILFTADQTYASLRRRIFDISIQGKLIKDFNIMEEAGGVDFHVKTNVQTRRLPAGAIAGRVVVGIFIFVVLVFVLRRKGYLGGRETEDDDKSKQPPTTLTLQIKLGREALVLSTRFSIVKGVLSDGTSIAVKQLSSKSRQGNREFITEVGMTSGLQHPNLNNNLARALFSLEKHCLHLDWPIRMKICVGIAKGLAYLHEESRLKIVHRDTKATNVLLDENLNAKISDFGLAKLHEEAYVLQEGNLLELVDLNLGPHYSRGYEDAPYRSHMHKLVSKSQTIHVFVWLACLKVKLWLKYQTSRATRLKSNTAERDARFKAFDKKLSRDSMTSISTLSQLQGIDSSSSSTQNKDDAREYSTTISLFSDSFK 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4331718 4334692 + MELO3C025661.2.1 Cme07g00514 332530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00514 457 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 3 138 - -
Cme07g00514 457 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 250 325 - -
Cme07g00514 457 Gene3D - 1 156 - -
Cme07g00514 457 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 207 249 - -
Cme07g00514 457 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 250 325 - -
Cme07g00514 457 Gene3D Phosphorylase Kinase; domain 1 204 251 - -
Cme07g00514 457 Pfam Malectin domain 4 133 IPR021720 -
Cme07g00514 457 ProSiteProfiles Protein kinase domain profile. 186 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00514 457 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 207 249 - -
Cme07g00514 457 SUPERFAMILY Protein kinase-like (PK-like) 207 327 IPR011009 -
Cme07g00514 457 Pfam Protein tyrosine and serine/threonine kinase 265 329 IPR001245 GO:0004672|GO:0006468
Cme07g00514 457 MobiDBLite consensus disorder prediction 424 444 - -
Cme07g00514 457 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 138 - -
Cme07g00514 457 Gene3D Transferase(Phosphotransferase) domain 1 252 353 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00514 - - - cmos:111446321 347.051
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00514 Cme-Chr7:4331718 Cme07g01343 Cme-Chr7:18904904 6.29E-93 dispersed
Cme07g00512 Cme-Chr7:4257093 Cme07g00514 Cme-Chr7:4331718 1.55E-22 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g50 . . . . . . . . . . . . . . . . . Bhi09g03547 . . . . . . . . . . . . . . . . . . . . Cme07g00514 Blo07g00995 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0047395 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65005 PF11721 Malectin 1.20E-21 CL0202 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00514 Cme_Chr07 FPKM 0.0 0.0 0.43387 0.0 0.213504 0.532362 0.0 0.336039 0.0 0.450063