Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00516 ATGTCTCGCTTCAGACCTCTTTACTCTCAAATCCTACTCTTCAATTCACAATCCACTATTTCCCTTCAATTTCACCTTCTTCCTTCTACTTCTCGATCTTTCTCGCTGAAAATCGGGGAGGGGATTGAACCAGAAATTGTCCCCGCTAAGACGAATACACCGCCGGCGTTTCTGTCTAGGGAAGCCGCGAATTCGAACGGAAGTGTAAAATCTCTAGAAGGAAAAGGTGGGAATGAAGAGACTGTGCTGAAAGGAAAAGTGGGTTCGGAAGGAAACAAGAAATTAGCGAGGGAGGATGCTTTGCTCCGCAAAGAGCTCTCTCCGGATATGGAGATGTTTGCGAGACATTTGTACAGGGAAGGATATTTTAACTATGCTAATTTCTTGCCCGTTAACAAATTTGTTCTTAGTTACTTTGAGTGTCGTCGTGGACGGAATTTTATCAAGTCTACAGCTCAGCGGTTTGGCAGAGACAATCAAGAAATTGCAAAATGGTTGTCTGGCAGTGACTTAAGAAAGGTTGCCCTCTTTGGATGCCCATCCACTGCAAGAAAAGATGTTTTTGCGGCTAAAAGATTGCGAAAATTTTTTAGAATCCAAGAAGACACAGTCTGTCACAAATGCATCTTGAGACAATCATGCAAGTATGTGAATCAAGGTGTTTGGAATGAGGACACCAAGAATTTGAATTTAGGGGTTGTTTTGCAAGTTATTACTCAATACGCCTTGGAAGCTATACCAGAACAACTTATAATACCTGAAGATATAAAGGCTTCCGTAAGCCGATTGCTGAAAGAGATATTGAATCTAAGTCAGACTGTGTCGAGGAACTAG 834 41.97 MSRFRPLYSQILLFNSQSTISLQFHLLPSTSRSFSLKIGEGIEPEIVPAKTNTPPAFLSREAANSNGSVKSLEGKGGNEETVLKGKVGSEGNKKLAREDALLRKELSPDMEMFARHLYREGYFNYANFLPVNKFVLSYFECRRGRNFIKSTAQRFGRDNQEIAKWLSGSDLRKVALFGCPSTARKDVFAAKRLRKFFRIQEDTVCHKCILRQSCKYVNQGVWNEDTKNLNLGVVLQVITQYALEAIPEQLIIPEDIKASVSRLLKEILNLSQTVSRN 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4340081 4342521 - MELO3C025659.2.1 Cme07g00516 332532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00516 277 PANTHER OS01G0203300 PROTEIN 82 270 - -
Cme07g00516 277 PANTHER ZINC FINGER PROTEIN 82 270 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00516 - - - csv:101222492 500.745
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00516 Cme-Chr7:4340081 Cme09g01348 Cme-Chr9:18674229 3.83E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g88 . . . Bda09g00549 . . . . . . . . . Car09g00594 Sed04g2474 Cpe06g00523 . Bhi09g03537 Tan01g4293 Cmetu07g0160 . Hepe01g1455 Mch11g0994 . Cla11g01695 Cam11g1762 Cec11g1782 Cco11g1786 Clacu11g1921 Cmu11g1732 Cre11g2140 . Cone9ag0234 . . Lsi04g01993 Csa04g02266 Chy07g00008 Cme07g00516 . . . . . . . . . . Cmo09g00653 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012689 1 1 1 1 0 0 1 1 0 1 1 1 1 1 1 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00516 Cme_Chr07 FPKM 11.406129 14.006085 11.842179 13.167776 3.416235 3.456336 2.710193 52.342567 48.939922 52.502533