Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00535 ATGACCTGCTCCAACCTCATTCTTCTTTCTTCCCTCCCTAAATTCCCCACCTCCCCCTTCATTTATTCCCTTTCTTTCTCTTCTCATTTCACCCCCTTTTTCCTTCAACGCCCACCAATGTCTTCATCTTCTCTCAAAATCGTCGCCGAGTACGCCAAGTCCAATCGCTCTACGTGCAAGAACTGCTCCAAAACCATCCCTGCGAGCACACTGAGGTTGGGTTTCGTCACCAGAGATGGCCGGGGTTTCGACATGACCCGCTGGTTTCATTCCCATTGCGCTTCTTTTGGTTCCCACCCTGTTTCTTCCGCCGAGGACATTAATGGGTTCGCCCTCTTGAAGGATAGTGATCAGGAAGCTCTAAAGAAAATGGTTTGCAGAAGCCATGAATCTAAGGTCCACAAAAGGGACGGGGATGAAAAAGATGGAGTTGAAGAAAGAGATCAAAAGAAAGTCAAGGTCCACCAAAAGGATGGGGATGAAGAATATGGAGTCGAAGAAAGAGATCAAAAGAATGTCAAGTTATCTACCTCTAGTTTGCAGCCAAAGTTAGATCTTGTCCTTACAGCTTCTGACATAAAGACCAAGTATAAGGATGCTACACTTTTAGCTAAATGGAAGGCATTCCAGACGCTCATCTTTCTTGAGCAGGATGATGGGCTACATCATTCAAGCAAAATAGCTGCATTTGATTTTGATGGCTGTCTAGCAAACACATCCGTTAAAAGAGTAGGTGCAGAGGCGTGGTCTCTGATGTATCCTTCAATACCACAAAAACTTCAGAGCTTGCACGATGATGGCTACAAGCTGGTAATATTTACGAACGAATCCAACATTGAGAGATGGAAGAACAAGAGACAGGTTGCCGTGGACTCCAAACTTGGGCGGCTCAATAATTTTATTAGTCAAGTCAAGGTCCCAGTTCAGGTGTTTGTTGCCTGTGGAATAGGAAGCAAATCAGCTGGGAGAGCCAAGGATCACAGTGATGCTGATATCAAGTTTGCTCAGGCCATTGGGTTGAAGTTTTATGTTCCTGAAGAGTTTTTTGTTGAGTAA 1056 44.79 MTCSNLILLSSLPKFPTSPFIYSLSFSSHFTPFFLQRPPMSSSSLKIVAEYAKSNRSTCKNCSKTIPASTLRLGFVTRDGRGFDMTRWFHSHCASFGSHPVSSAEDINGFALLKDSDQEALKKMVCRSHESKVHKRDGDEKDGVEERDQKKVKVHQKDGDEEYGVEERDQKNVKLSTSSLQPKLDLVLTASDIKTKYKDATLLAKWKAFQTLIFLEQDDGLHHSSKIAAFDFDGCLANTSVKRVGAEAWSLMYPSIPQKLQSLHDDGYKLVIFTNESNIERWKNKRQVAVDSKLGRLNNFISQVKVPVQVFVACGIGSKSAGRAKDHSDADIKFAQAIGLKFYVPEEFFVE 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4451990 4457243 + MELO3C025641.2.1 Cme07g00535 332551

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00535 351 Gene3D - 203 318 IPR023214 -
Cme07g00535 351 Gene3D - 319 351 IPR023214 -
Cme07g00535 351 SMART zf_PARP_3 50 126 IPR001510 GO:0003677|GO:0008270
Cme07g00535 351 TIGRFAM HAD-SF-IIIA: HAD hydrolase, family IIIA 226 318 IPR006549 -
Cme07g00535 351 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 47 125 IPR001510 GO:0003677|GO:0008270
Cme07g00535 351 Gene3D - 40 147 IPR036957 GO:0003677|GO:0008270
Cme07g00535 351 PANTHER BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE 39 350 - -
Cme07g00535 351 SUPERFAMILY HAD-like 208 349 IPR036412 -
Cme07g00535 351 Pfam Polynucleotide kinase 3 phosphatase 321 349 IPR013954 -
Cme07g00535 351 Pfam Polynucleotide kinase 3 phosphatase 226 315 IPR013954 -
Cme07g00535 351 MobiDBLite consensus disorder prediction 128 170 - -
Cme07g00535 351 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 45 133 - -
Cme07g00535 351 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 50 125 IPR001510 GO:0003677|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00535 K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78] - csv:101207352 630.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00535 Cme-Chr7:4451990 Cme04g01565 Cme-Chr4:22952724 8.81E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g109 . . . . . Bpe08g00982 . . . . . Cma09g00822 . Car09g00740 Sed04g2434 . . Bhi09g03513 Tan01g4317 Cmetu07g1764 . Hepe01g1442 Mch11g1008 . Cla11g01709 Cam11g1777 Cec11g1798 Cco11g1803 Clacu11g1936 Cmu11g1747 Cre11g2155 Cone6ag0195 Cone9ag0226 . . Lsi04g02011 Csa04g02284 Chy07g00022 Cme07g00535 . . . . . . Bma07g01141 . . . Cmo09g00817 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010926 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 2 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00535 Cme_Chr07 FPKM 2.373266 2.16972 24.985914 24.517529 147.499466 150.342026 143.915619 19.0075 18.431444 17.542643