Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00537 ATGGCGAGACGAACCTTCACGACGGAGTTAGGCTGCATAGCTTGCGAGGACCTTGCCGATTTTGGCGCTGGAAAGGAAGGCTGGCTCGTCGACAACCCCAATCTACTTTGTGCCCTTGATTCGCACTCTCTTGCGCTGGCCAATCGATCTATCATTCTTGTTCTTGGTTGGTCTGGTTCCGATGGATATCGGCTGAAGATCAGGCCGTCTGATTTGTCTCCGATCGAAGCGGAGTACATTTCCGCTTTAGAATGGTTGGTGTTGGATGAAATTAAGGTGATTTTGGTCGGGACTTCATGTGGGTATTTTCTGATTTACTCCCTAAGTGGGGATTTGATTCTCAAACAGATGATCCATCCTGGAAGAATTCTAAAGATTAGGGTTCATGGTTCAAAGAGGGATTTATCCCATGGATCTTCTTTGGAGGAGGTTTCGGTAGCTATGCCAGGTGTAATTGCCCGAATTGAAGGATCTGATATTCAGAATACACTGCAAAAATGGTTTCAAGAATCAAATGCACGGTTTTGGGATCCAAAATCACAACAACAGGATATGAACGATTCTGAAAATTCGGTTGAAAAGTTAGCTTACCAAGTATGGAATGTCAGCAAATATGGTGCTTGTGCAGATGCAGCAATCACTGGTGTTATGCCTCCTCCATTGATGGAACTCCAGTCAAGTGAACGTTATTTTTGTGCAGTCACTGTTGGAGAGGATGCTGTTATTTCAGCATTCAGACTTTCTGAAGACAAGAGCAGGTCTTTAGTGGGAGCCATTTTATCAAAAGTTGTCCCTGCAACATTTTCGACAATAGCTTCATTTTCAAAAATGATTTGGCGAAGTGAACCAAAAACATCTAAAAAGCCGGATGCGAAGGGTCAAGCTTTTGCTCGAGCCTCTCCTTTGACGTGCTTGAAGGACCATCCGAGAAAGGGTGAGAAACTGACTTTGTCTCCAAGCGGTACACTGGCAGCGATTACAGATTCATTGGGTCGAATACTGCTCCTAGACACCCAGGCACTTGTGGTGGTGCGACTGTGGAAGGGATATCGTGATGCCAACTGTTTGTTCATGGAGATGCTAGTCAATAGAGATACTGCATCATCGAGTTCTAATTCCATGGATTATGAACCAGCAAAAAATGATTACTGCTTGTGTTTGGCTATTCATGCTCCACGAAAGGGGATAGTTGAGATATGGCAGATGAGAACGGGGCGTCGTCTCCGAACCATTCGATGTTCTAAGGGTAGCAAACTACTGCAACCTTCCTCCAGGTTTGGATCGTCCATGGTTTCCCCTTATGTGCCATTGGAAGTTTTCTTATTAAATGGAGATTCTGGTCAGATTTCTGTTCTAAACCGAACCCTTTGA 1371 44.64 MARRTFTTELGCIACEDLADFGAGKEGWLVDNPNLLCALDSHSLALANRSIILVLGWSGSDGYRLKIRPSDLSPIEAEYISALEWLVLDEIKVILVGTSCGYFLIYSLSGDLILKQMIHPGRILKIRVHGSKRDLSHGSSLEEVSVAMPGVIARIEGSDIQNTLQKWFQESNARFWDPKSQQQDMNDSENSVEKLAYQVWNVSKYGACADAAITGVMPPPLMELQSSERYFCAVTVGEDAVISAFRLSEDKSRSLVGAILSKVVPATFSTIASFSKMIWRSEPKTSKKPDAKGQAFARASPLTCLKDHPRKGEKLTLSPSGTLAAITDSLGRILLLDTQALVVVRLWKGYRDANCLFMEMLVNRDTASSSSNSMDYEPAKNDYCLCLAIHAPRKGIVEIWQMRTGRRLRTIRCSKGSKLLQPSSRFGSSMVSPYVPLEVFLLNGDSGQISVLNRTL 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4461364 4465965 + MELO3C025639.2.1 Cme07g00537 332553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00537 456 PANTHER RAB3-GAP REGULATORY DOMAIN 1 449 IPR026059 GO:0043087
Cme07g00537 456 SUPERFAMILY WD40 repeat-like 80 416 IPR036322 GO:0005515
Cme07g00537 456 Pfam Rab3 GTPase-activating protein regulatory subunit N-terminus 28 420 IPR032839 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00537 K19937 RAB3GAP2; Rab3 GTPase-activating protein non-catalytic subunit - csv:101207844 881.322
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g111 . . . . . Bpe08g00980 . . . . Cma01g01248 Cma09g00820 Car01g01070 Car09g00737 Sed04g2436 . Cpe02g00668 Bhi09g03511 Tan01g4320 Cmetu07g0744 . Hepe01g1440 . . Cla11g01711 Cam11g1779 Cec11g1800 Cco11g1805 Clacu11g1938 Cmu11g1749 Cre11g2157 . . . . Lsi04g02013 . . Cme07g00537 . . . . . . Bma07g01139 . . Cmo01g01304 Cmo09g00815 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007413 1 1 1 1 1 0 2 0 0 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00537 Cme_Chr07 FPKM 1.276316 1.149951 7.678401 8.063092 6.102731 7.631505 8.351748 5.387117 8.389377 5.408359