Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00544 ATGGATTTCCAGGATGATGGCTTTGAGGGATCTGCAAATGAAGAAATTATTTTTAGGGAGATTTTCTTTGGGAATGGCTCTAGCCATTCCAATAAGAGGTGTCCTCACAAGGCATTTAGTTATGAACACAGGCCCTGTAAAATTAATGATGCATCTTTATGTTCAAGTAGTGAACCCTCAACAGTCTCCAGTTATTCATACTCTAGAAATATGAAGCTTGATGAATGTTACAATGCTACTGAGAATATTAGGACCGGTTCTGCATCTAATAGTCTTCCATGCAAAAGGATTTCAGTGGAAGGTGACGATGGGAATGCAAGTGGCAAGCGAATTAAAGTTTCAACTGATGAAGCTTCTGATTCTGTACCTAATCTAGTTAAGCTTAAACAATCGTCAGATAGTATAAGAGTACCTGTTTCTGCTAATTGTTATCCAGCCGAGGAATGTGATTCTGAATCATTTACATTCCACATTGTAGAATCGTCTAGACAGGGAATTATCTCTAGTTGCTATCGGCTAAAGGACCTCGAAGAAATGGACAGTAATTTGGGTGATCCTGATGCCGTCAAACGGACATCATTGAATTTAGAGGGTAATGATGAACCCAATATGGTGAATAAAGTTAGTGCTTCGCCTGTTTCCCAAGAGAGCTCCATGACCAGGCTGTTGGTAGCAAGTCCTGATACAATCAACGAGAAGTTTGGATCTCCACTACATCTGGAGGTAGGACAAATGAAATCTCTATGCCCAGAACTGGGTGCTTCCTTGAAGACAGATTTGAGTAGGGATCCCCGTCCTCTTCTCCACTATCATGTTGTTCACCTATTTATTGCAGCTGGATGGTCTATTGAAAGGGTTAAAAGACCTTGCAGGCGTTATATGGAAACAGTTTACAGATCACCCCAGGGAAGAGCCTTTCGTGAATTTTCCAAGGCTTGGAGGTTTTGTGGCGAACTTCTATTTGCTGATAGATGTAGTTTTGTAAAGGATGTAGACAGCAAAGAATGGACTGGCATTCATCAATTTTTATTTGATCTTTCTGACACATTGTTACAGTTTGGGAAGGAAATGAATCAATTGGGGGCCACAACTTCATTGGCTAATTGTTGGGTTATTCTTGACCCCTATGTGGTGGTTGTGTTCATCGACAGAAAGATTGGTCCACTTAGGAGGGGAGATTTAGTTAGAGCTACCTGTAGTGTTGGGATTAATGGGAGCGGTAAGACCGATGCTTTTGTGACGTTAGTAAATGAAGACAATAGTATTTGTAACCTGTCTGCTGACAAAAATGCATCACCACTACATGATAATTCACCCTCTGCCAAGAGTGCATTGACAGAGGCCCCACTAAAAGATCTTGATGGGGGCAATTGTGCTTTTGATGAGCAAACCTGTGATACAAGTTTGTCCAATTACTATGGGCACACAGAAGATGGAACAACGAAATTTCCGACAAGGGTGTCTAATTATGACCCCAATTTGGAGAATGGTCTGAATTGCACGGGGAGTCATTTTAATGAACCTGGGAACAAAATAGAGTCTGAGGATTTAACTTCATCACCTGCTTATTTTTCAGGTTCCACCTGCAAACCTAGATGTCTGGCTGATGGTCCTGTTCCATCTGGAAATTCAGATAATGTTGTCAGAATTTCTGGCCTTACATCTCCTGATGAGGATAGCACTTTGTATTGTTCAGATGAACAGAGCTCTGAAAATCATGTTGAGAACCCTAATGAAATGATGAAAAATGCACTAACATGTTCCCTAGTGGAAGGGAAAAAACTGGAAGTCCCACTCAGTAAGGCAGAAAATAATTTGGAAGAATCTCTGAACGACTGTGCAAACTATACAAGTGACGGTCTATCTCATTCTTGTGCCTCAGGGGTTGTACAGAAGTCTTCACAAAATGAAGAAGGTGGGCTGAACTTTTCAGCTTCAATGTTCAAAACAGAGGATAAAGTTTCTGCCATACATTCTATTTTGAAGAAGAAAGGGCGCCGAAAGTGTAAAAAGATATCTGAAATTAAACCTAACTTGCCACCTCAGATTGATATTGATGGGAGTTGCTCTCAGTTAGATATGATAGAAGATCAGAAGTCCCATATAGCCGATACTAAAAACGTGGACAGTCATGAGAAGAACTTGTCTCTCAGTCCTATCTCATGCCACTCTGAGAGGAAAAGTTCAAAGCTCAAAAAGAATTTTGACAGTCTTAAAGGTTCAAAAACCAGAAAGAAGAAATTGAATGAATGTCAAATTGAAGATGATGATCTATTAGTTTCAGCCATTATTAGAAACAAAGATGTCAGTTCAAGTGCTGCTGGATTTTCCCATGTAAGAAAATACTTAAAATCTAGAGCGAAAATGAACCGCAAAAGTCAAAAGAGTAGTTGTAAGTTACTCCTAAGAAGCTTGGGTAATGGGGAAAAGAATTATAAAGATGGCAAGTGGTATGCCCTAGGGGCTAGAACAGTGTTGTCATGGTTGCTAGATGCTGGGGTTATATCCTCAAATGATATAATCCAATACCAAAGCCCCAAGGATGGTAGTGTAGTTAAATATGGTAGAATAACTGGAGATGGCATCATTTGCAATTGCTGCGGTGATCTACTCTCAATATCTAAATTTAAAAGTCACGCAGGTTTCAAATTTAATCGTGCTTGTTTGAATCTTTTCTTGGACTCTGGGAGGCCTTTCATGTTGTGCCAGCTTCAGGCCTGGTCAACTGAATATAAGACAAGGAAAAGTAGGACCAGAACAGTGGAAGTTGATGAAGATGACCGAAATGATGATTCATGTGGGATTTGTGGTGATGGTGGAGAACTAATATGCTGTGATAATTGCCCCTCTACATTCCATCATTCTTGTTTGTCAATTCAGGAACTCCCTGAAGGCAACTGGTATTGCTTAAACTGTACTTGCCGGATATGTGGTGGTTTGGTGAATTATGAAGAGATTTCAAGTTCTTCTGATGCGCTAAAATGTTTTCAGTGCGAGCAAAAGTATCATGGACAATGCCTGAAACAAAGAGACATCAATTCTGGAGTAGAATCTCATATTTGGTTTTGCAGCGATAGTTGTCAGAAGATTTACACAGCTCTTCAATCACGACTTGGATTGACTAATCAGTTTGCAAATGGGTTTTCATGGATGCTTCTTAGATGCATTCATAACGACCAGAAAATTCTGTCTACCCCACGGTTAGCTATGATGGCAGAATGCAATTCCAGATTAGTAGTGGCTCTTACCATTATGGAGGAATGCTTTTTGTCCATGGTAGATCCAAGAACAGGAATTGATATGATACCACATCTGGTGTACAGCTGGAAGTCTAGTTTTCCTCGTCTGGACTTTCATGGATTCTACACTGTGATACTTGAGAAAGATGATGTGCTGCTATGTGTAGCTTCTATCAGGGTACATGGATCAGAACTGGCTGAGATGCCCCTAATTGCAACTTGTAGTAAATATCGACGCCAGGGAATGTGTAGGCGTCTACTGAATGCAATAGAGGAGATGCTGATGTCTTTTAAGGTGAAAAAGCTTGTGATAGCTGCAATTCCTAGTCTAGTGGAGACATGGACCGAAGGTTTTGGCTTTGCACCTGTGGAAAATGAGGAGAAACAAAGTCTTCACAGGTTCAATTTGATGGTGTTTCCCGGAACAGTACTCCTAAAAAAGGCCCTGTATGTAAGTGGCCAAACTACAGAGACAACAGTAGGAGTACAACTTGACACCAATACGAAACAGCAATGCAATTCCAATGAACCATGTCCTAGAATGGAAATGAAATGTTCAAAATATCAAGAATTACAAGAACACAATGGTGAAAAGACAAAGGACGATCACGAAGCAAATCCAGCTCCTCCAGTCGATTCATCTACATTGCAGTTGGTTGAATCAAATGGATTGGATACTTCTCCAGGACAGAAATTTGTTGAGTCAAACTGTTGCACTGACATAGTTGGTGCCACAACCGAAACCTGCAACCACGAGGCAAAAAAGCTGTTGAAAGTAGAAGTTGGCGTAGAATGCGACATTCAGCTTTCGGAAGGAAAGAGCTGGGATGAAGGAGTTCATGGAGCCACTATGACTAGATTTGTAGAACCTGTTGTTCTAACTTAG 4125 40.61 MDFQDDGFEGSANEEIIFREIFFGNGSSHSNKRCPHKAFSYEHRPCKINDASLCSSSEPSTVSSYSYSRNMKLDECYNATENIRTGSASNSLPCKRISVEGDDGNASGKRIKVSTDEASDSVPNLVKLKQSSDSIRVPVSANCYPAEECDSESFTFHIVESSRQGIISSCYRLKDLEEMDSNLGDPDAVKRTSLNLEGNDEPNMVNKVSASPVSQESSMTRLLVASPDTINEKFGSPLHLEVGQMKSLCPELGASLKTDLSRDPRPLLHYHVVHLFIAAGWSIERVKRPCRRYMETVYRSPQGRAFREFSKAWRFCGELLFADRCSFVKDVDSKEWTGIHQFLFDLSDTLLQFGKEMNQLGATTSLANCWVILDPYVVVVFIDRKIGPLRRGDLVRATCSVGINGSGKTDAFVTLVNEDNSICNLSADKNASPLHDNSPSAKSALTEAPLKDLDGGNCAFDEQTCDTSLSNYYGHTEDGTTKFPTRVSNYDPNLENGLNCTGSHFNEPGNKIESEDLTSSPAYFSGSTCKPRCLADGPVPSGNSDNVVRISGLTSPDEDSTLYCSDEQSSENHVENPNEMMKNALTCSLVEGKKLEVPLSKAENNLEESLNDCANYTSDGLSHSCASGVVQKSSQNEEGGLNFSASMFKTEDKVSAIHSILKKKGRRKCKKISEIKPNLPPQIDIDGSCSQLDMIEDQKSHIADTKNVDSHEKNLSLSPISCHSERKSSKLKKNFDSLKGSKTRKKKLNECQIEDDDLLVSAIIRNKDVSSSAAGFSHVRKYLKSRAKMNRKSQKSSCKLLLRSLGNGEKNYKDGKWYALGARTVLSWLLDAGVISSNDIIQYQSPKDGSVVKYGRITGDGIICNCCGDLLSISKFKSHAGFKFNRACLNLFLDSGRPFMLCQLQAWSTEYKTRKSRTRTVEVDEDDRNDDSCGICGDGGELICCDNCPSTFHHSCLSIQELPEGNWYCLNCTCRICGGLVNYEEISSSSDALKCFQCEQKYHGQCLKQRDINSGVESHIWFCSDSCQKIYTALQSRLGLTNQFANGFSWMLLRCIHNDQKILSTPRLAMMAECNSRLVVALTIMEECFLSMVDPRTGIDMIPHLVYSWKSSFPRLDFHGFYTVILEKDDVLLCVASIRVHGSELAEMPLIATCSKYRRQGMCRRLLNAIEEMLMSFKVKKLVIAAIPSLVETWTEGFGFAPVENEEKQSLHRFNLMVFPGTVLLKKALYVSGQTTETTVGVQLDTNTKQQCNSNEPCPRMEMKCSKYQELQEHNGEKTKDDHEANPAPPVDSSTLQLVESNGLDTSPGQKFVESNCCTDIVGATTETCNHEAKKLLKVEVGVECDIQLSEGKSWDEGVHGATMTRFVEPVVLT 1374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4534343 4549893 - MELO3C025632.2.1 Cme07g00544 332560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00544 1374 MobiDBLite consensus disorder prediction 1274 1295 - -
Cme07g00544 1374 CDD NAT_SF 1124 1184 - -
Cme07g00544 1374 Pfam PHD-finger 933 974 IPR019787 -
Cme07g00544 1374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 923 974 IPR013083 -
Cme07g00544 1374 SUPERFAMILY FYVE/PHD zinc finger 910 974 IPR011011 -
Cme07g00544 1374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 975 1030 IPR013083 -
Cme07g00544 1374 PANTHER PHD FINGER FAMILY PROTEIN 2 1301 - -
Cme07g00544 1374 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1066 1230 IPR000182 GO:0016407
Cme07g00544 1374 ProSiteProfiles Zinc finger PHD-type profile. 930 975 IPR019787 -
Cme07g00544 1374 PANTHER INCREASED DNA METHYLATION 1 2 1301 IPR031086 -
Cme07g00544 1374 Gene3D - 1103 1217 - -
Cme07g00544 1374 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1119 1204 IPR016181 -
Cme07g00544 1374 Pfam Tify domain binding domain 855 905 IPR032308 -
Cme07g00544 1374 SMART PHD_3 974 1028 IPR001965 -
Cme07g00544 1374 SMART PHD_3 932 973 IPR001965 -
Cme07g00544 1374 Coils Coil 599 619 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00544 - - - csv:101204381 2602.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02078 Cme-Chr1:29606538 Cme07g00544 Cme-Chr7:4534343 2.60E-104 dispersed
Cme07g00544 Cme-Chr7:4534343 Cme11g01411 Cme-Chr11:20939667 5.86E-70 dispersed
Cme07g00544 Cme-Chr7:4534343 Cme04g02602 Cme-Chr4:31970247 1.61E-38 transposed
Cme07g00544 Cme-Chr7:4534343 Cme04g02472 Cme-Chr4:31223673 2.16E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g125 . . . . . . . . . . Cma01g01243 Cma09g00813 Car01g01063 Car09g00728 . . Cpe02g00675 Bhi09g03500 . . . . . . Cla11g01718 Cam11g1787 Cec11g1808 Cco11g1813 Clacu11g1946 Cmu11g1757 Cre11g2165 Cone6ag0187 Cone9ag0213 . . Lsi04g02022 Csa04g02295 Chy07g00033 Cme07g00544 . . . . . Bpe01g00461 . . . Cmo01g01297 Cmo09g00807 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004598 1 3 1 1 1 0 2 1 0 1 1 1 2 1 2 2 1 2 2 1 1 1 1 2 1 1 1 3 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41620 PF16135 TDBD 5.50E-15 No_clan Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00544 Cme_Chr07 FPKM 37.544441 39.223953 30.219578 30.070108 38.551331 39.898705 41.213978 36.825859 34.71056 36.827347