Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00553 ATGGGAAATCTTCCCTTTTTGTTTTCTTTCTTATTGTTTGCTCTGATGGTTTCTGGAAACCATGAAACCGAAAGAAATGCGAGTGCAACGATGATTGTTGGTGAAAAGGGTAGAATAGGGGCCATTGTAGATGTGAGTTCCAGGATTGGTAAGGAAGAGATTTTAGCTATGCACATGGCTATAGAGGATTTTAACTCCTTGAGCAATCAAAATTTCAGTCTTGTCATTAGAGATACCAGAAATGACCCCAATCTGGCAGCTCTTGCAGCTAAAGATCTCATAAGTGTACAACGAGTTCAGGCTCTAATAGGGCCACAAACTTGGGAAATGGCATCCGTAGTTGCTGAGGTTGGAAGTGAGAATCAGATTCCGGTACTAGCATTAGCTAATGAAATACCAAAATGGGCAACCGACAGGTCCAAATTTTTGGTCCAGGCTTCTCCTTCTCAGTTAAATCAAATGAGGGCTATAGCTGGTATTGTCAGTTCAGGGGACTGGCATCTAGTCAATGTTATATATGAAGATAGTGATTTCTCAACCACTGGAGTATTTCTTTATCTTGTACATGCTCTCAAAGATGTAGGAGCTGAATTGGCACTCCGTCTGTTTGAGATAGCAAACGAGATGGGAATGATGGGAAAGGACTATGTATGGATCACCACTGATTCTTTCACAAGCCTTGCACATTCTTTCAATGTTTCTATCAACTCTTTACTACAAGGAGTTGTTGGAGTCAAGAGCTACATCTCAGAAAGAAATCCTCCATATCGTGAATTTTATCTTCGATTTTGTCAAAGGTTTAGATTAGAGCATTTTGATGAGCACAACAACGAGCCCGGTATTTTTGCAGTGCAGGCATATGATGCTGCAACGACAGCAGCTTTGGCAATGAGTGAAATCCAAGAAAAGGGTAATGACTTATTAGATAAAATAAAGCTCACTGACTTTCAAGGACTTGGTGGAAAGATTCAGTTTAAGGATAGAAAATTAGCCCCAGCCGATACTTTTCAGATCATCAATGTGATTGGGAGGAGTTATAGGGACCTAGGCTTCTGGTCTGATAAATTTGGCTTCTCGCAAGATTTGCGGCAAAATTCATCTTCTAGCTTGTTGATGAAGAAACTTGACAACGTGTTTTGGCCAGGTGGATCTTTGAAAACTCCAAGGGGATGGGTAATACCAACAGAATCCGCCCCTTTGAGAATTGGGGTGCCAACTAATTCCATGTTCAAACAGTATGTACGTGTGGAAGAAGATCCTACGGGAAACAATTTAACCTTCAATGGACTTGCAATTGATCTGTTTAAAGAAATCTTAGACTACCTTCCGTTTGCTCCACATGTCTTCTGTCCTTTCAACGACACTTATAATGATTTAGTGAAAGAAATCTACTTGAAGAAATTTGATGCAGCTATAGGTGACATAGCAATAACCGCAGAACGCGTAGAATACGCAGAATTTACACATCCCTACTCTGAAGCAGGACTGGTGATGATAGTTCCTACCCGGAAAGACACAAGTAACAAAGCATTGTTGTTCACAAAGCCCTTTACAGTGACCTTGTGGATTCTAATTGCCGTGGTAACTGCCTACAATGGCTTTGTCGTGTGGTTCATAGAACGAAATCACTGTCCTGAACACCAAGGTTCAATGTTTGATCAAGCTGGAGCCATGCTTTGCTCATCCTTCACCACTCTCTTCTCCTTGCATGAAGGCAATAGGCTGCATAGTAACTTATCACGAATGGCTATGGTGGCCTGGCTATTTACGGCACTTGTGATAACTCAGACATACACTGCCAATCTTGCTAGCATGCTCACTGTTCAAAAGTTTGAAGCGTCGATATCAAATATCGAGACTCTCCATAAAATAAATGCATCCGTTGGAAATGGCAGAGGAACCTTTGTCAAGACATATTTGGAAGAAGCTTTAGACTTTCCTGCTGAAAATATAAAAAGCTACACTACCCCGAACGACCTAGTTGACGCTCTCAGAAACAAGGAAATAGCAGCTGCATTTCTTGAAGTCCCTTTTGCAAAATTATTCCTTGCTAGATTTTGCAATGAATTCATGATTTCTGGACCAACCTACGTTGTCGGAGGATTTGGATTTGCATTTCCAAGAGGCTATCCGCTGTTACGAGATGTTGACAAAGCACTGCTTAAGGTATCTGAAAGTGGGAAGTATAAAAAGTTGGAGGAAAGCATGATTGCTAGTGAGAAATGTGAGGATAGGGATGTAAAAGTTGAAAGTTCAAGCCTTAGCCCCAATAGCTTCGTTTTACTATTTGTATTGAGTGGAGGAGTATCAACAATAGCATTAACATTGTACACTATCAGTGCTTATAAATCTTATCTTCAACAGAACGCTATTTGGGGACTCATGTTGGCTGTAATTAAGCGCTGGAGAAATCACAACAGGGGATTTTCTGGACGAGTAAGCGACTTGCCACAAACTGAACCCAAGAACTTCCCAAAGGCTGTAGACCTGCAAATTCAGGTCTAG 2505 41.12 MGNLPFLFSFLLFALMVSGNHETERNASATMIVGEKGRIGAIVDVSSRIGKEEILAMHMAIEDFNSLSNQNFSLVIRDTRNDPNLAALAAKDLISVQRVQALIGPQTWEMASVVAEVGSENQIPVLALANEIPKWATDRSKFLVQASPSQLNQMRAIAGIVSSGDWHLVNVIYEDSDFSTTGVFLYLVHALKDVGAELALRLFEIANEMGMMGKDYVWITTDSFTSLAHSFNVSINSLLQGVVGVKSYISERNPPYREFYLRFCQRFRLEHFDEHNNEPGIFAVQAYDAATTAALAMSEIQEKGNDLLDKIKLTDFQGLGGKIQFKDRKLAPADTFQIINVIGRSYRDLGFWSDKFGFSQDLRQNSSSSLLMKKLDNVFWPGGSLKTPRGWVIPTESAPLRIGVPTNSMFKQYVRVEEDPTGNNLTFNGLAIDLFKEILDYLPFAPHVFCPFNDTYNDLVKEIYLKKFDAAIGDIAITAERVEYAEFTHPYSEAGLVMIVPTRKDTSNKALLFTKPFTVTLWILIAVVTAYNGFVVWFIERNHCPEHQGSMFDQAGAMLCSSFTTLFSLHEGNRLHSNLSRMAMVAWLFTALVITQTYTANLASMLTVQKFEASISNIETLHKINASVGNGRGTFVKTYLEEALDFPAENIKSYTTPNDLVDALRNKEIAAAFLEVPFAKLFLARFCNEFMISGPTYVVGGFGFAFPRGYPLLRDVDKALLKVSESGKYKKLEESMIASEKCEDRDVKVESSSLSPNSFVLLFVLSGGVSTIALTLYTISAYKSYLQQNAIWGLMLAVIKRWRNHNRGFSGRVSDLPQTEPKNFPKAVDLQIQV 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4655462 4658855 + MELO3C032359.2.1 Cme07g00553 332569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00553 834 CDD GluR_Plant 399 737 - -
Cme07g00553 834 Gene3D - 511 638 - -
Cme07g00553 834 Pfam Bacterial extracellular solute-binding proteins, family 3 424 734 IPR001638 -
Cme07g00553 834 SMART GluR_14 401 739 IPR001320 GO:0015276|GO:0016020
Cme07g00553 834 PIRSF IGluLR_plant 193 791 IPR017103 -
Cme07g00553 834 PIRSF IGluLR_plant 2 198 IPR017103 -
Cme07g00553 834 Gene3D - 34 161 - -
Cme07g00553 834 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 197 828 - -
Cme07g00553 834 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 28 198 - -
Cme07g00553 834 SUPERFAMILY Periplasmic binding protein-like II 378 734 - -
Cme07g00553 834 Pfam Receptor family ligand binding region 55 182 IPR001828 -
Cme07g00553 834 Pfam Receptor family ligand binding region 195 342 IPR001828 -
Cme07g00553 834 SUPERFAMILY Periplasmic binding protein-like I 38 393 IPR028082 -
Cme07g00553 834 Gene3D - 402 510 - -
Cme07g00553 834 Gene3D - 293 401 - -
Cme07g00553 834 PANTHER GLUTAMATE RECEPTOR 197 828 - -
Cme07g00553 834 PANTHER GLUTAMATE RECEPTOR 28 198 - -
Cme07g00553 834 Gene3D - 639 741 - -
Cme07g00553 834 CDD PBP1_GABAb_receptor_plant 38 362 IPR044440 -
Cme07g00553 834 Pfam Ligand-gated ion channel 735 767 IPR001320 GO:0015276|GO:0016020
Cme07g00553 834 Gene3D - 185 267 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00553 - - - csv:101209950 1509.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00553 Cme-Chr7:4655462 Cme03g01551 Cme-Chr3:24604918 1.44E-133 dispersed
Cme07g00552 Cme-Chr7:4647588 Cme07g00553 Cme-Chr7:4655462 0 tandem
Cme07g00553 Cme-Chr7:4655462 Cme07g00554 Cme-Chr7:4664112 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g145 Blo03g00683 . . . . . . . . . Cma01g01234 Cma09g00831 . . . Cpe06g00662 Cpe02g00682 Bhi09g03484 . . . Hepe01g1422 Mch11g1029 . Cla11g01725 Cam11g1795 Cec11g1816 Cco11g1822 Clacu11g1954 Cmu11g1764 Cre11g2172 . . . . Lsi04g02033 Csa04g02305 Chy07g00041 Cme07g00553 . . . . . . . . . Cmo01g01287 Cmo09g00824 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00553 Cme_Chr07 FPKM 32.225773 31.447205 36.728588 41.000401 56.401474 65.70565 54.678745 28.452288 31.826757 31.787252