Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00554 ATGGACGATAGCAGAAATGGCAAAATAGGTGTTATTGTAGACACGAGTTCCAGGATTGGTAAGGAAGAGATTTTAGCTATGCAGATGGCTGTTGAGGATTTTAACTCCTTTCGCAATAAAAGTTTCAGTCTTGTCATCAGAGACTACAAAAATGATCCAAATCTTGCAGCTCTTGCAGCAAATGATCTCATCTATATGCAACGAGTCCAGGTTCTTATAGGACCACAAACTTGGGAAGCGACATCCGTAGTTGCTGAGGTTGGAGATGAGAAACAGATTCCAGTTTTAGCGTTAGTTAATGAAATACCAAAGTATGCAAACAAGAGGTTCAAATTTTTGGTCGAAGCTTCTCCCTCTCAGTTAAATCAAATGAGGGCTATAGCCGGTATTGTCAGTTCGTGGGATTGGCACCTCGTCAATGTTATATATGAAGATAAAGATTTATCAACCACTGGAATATTTCCTCATCTTGTACATGCCCTCAGAGACGTAGGAGCTGAAGTAAGTGAATTTGTTGGTCTCTCTCAATTTGATTCTGATTTATTTTCCAAAGAATTGGAAAGGTTAAGAAGAGGATCAAGCAGAATTTTTGTAGTTCATATGTCTTTTAAGTCGGCAATGCGTCTATTTGAGATGGCAAAAGAGATGGGAATGATGGGAAAGGATTATGTTTGGATCGCTACTGATTCTTTCACAAACCTTGCATATTCTTTAAATTTTTCTAGTAACACTCTACTACAAGGAGTTGTTGGAGTCAAGAGCTTCTTCCCTGAAAACAATCCTTCATTTCACGAATTTTATAATCGATTTTCTCAAAGGTTTAGATTAGAGCATTCTGACGAGGACAATCATGAGCCTGGTATTTTCGCTATTCGGGCTTATGATGCTGCAAGGACAGTAGCTATGGCAATGAGTGAAATGCAAGAAAAGGGTAATCACTTGATGGAGAAAATAGAGCTCACTGATTTTCAAGGACTCAGTGGAAAGATTCAGTTTAAGGACAGACAATTAGCTTCATCTGATACTTTTCAAATCATCAATGTGATGGGGAGAAGTTATAGAGAATTAGGCTTCTGGTCTAATAAATTAGGCTTCTCACGAGAGTTGAGGGAAAATTCTTCTTCTAGCTCGTCGATGAAGGATCTCGTCGAAGTGCTTTGGCCTGGTGGATCGTCTACAACTCCAAGGGGATGGGTTGTACCAACAGATGCCACTCCATTGAGAATTGGGGTGCCAACTAGTTCCATGTTCAAAGAGTATGTGCATGTGGAAGAAGATCCTATGGGAAACAATTTATCCTTCAATGGACTTGCAATTGATCTGTTTAAAGCAACCTTAGACAACCTTAACTTCTCTCTGCCATACCAGTTTTTTCGTTTCGATGGACCATATGATGATTTGGTGGAGCAAATCTACCAGAAGAACTTCGATGCAGCCGTAGGTGATATAGCGATATTATCACGACGCTACAAGCATGCTGAGTTTACACATCCTTACTCAGAAGCAGGACTTGTGATGGTAGTTCCTACCACAAAAGATACAAGTAATAGAGCATTGATGTTCACAAAGCCTTTTACAGTGACCATGTGGTTTGCAATTGCTTTGATGAATGTCTACAATGGCTTTGTAGTCTGGTTCATAGAACGAAATCGCTATCCTGGTCATGAAGGTTCGATGTTTAATCAAGCCGGAACCATGCTTTGCTCATCCTTCACCACTCTCTTCTCCTTACATGGTAATATGCTGCATAGTAACTTGTCCAGAATGACTATGGTGGTTTGGCTATTTATGGCACTTGTGATAACTCAAATATATACTGCTAATCTTACAAGCATGCTCACTATTCAAAAGCTTGAACCAACTGTAACGGATATTGAAACTCTTCAAAGGGCAAATGCGTTAGTCGGATTTGGCAGAGGATCCTTTGTCAAAAGATATTTGGAGGAAGTTTTACACTTTCGTTCCGAAAACATAAGAAACTACTCTACACCTGATGATTATGCTGAAGCTCTCAGAAACAAGGAGATAGCAGCTGCTTTTCTTGAAGTCCCTTTTGTAAAAATATTCCTTGCAAGATTTTGCAGGGAATTCATGGTTTCTGGGCCAACCTATAAAGTTGGAGGATTTGGATTTGCATTCCCAAGAGGCTCGCCGATGTTAACGGATATTAACAAAGCATTGCTTAAGGTATCCGAAACCGGGAAGTTCAGAGATTTGGAAGATAGCATGATTGCTAATGAGAAATGTGAGGATGAGGATTCAAAGGGTGAAAAGTCAAGCCTCAGTCCCAGCAGCTTCTTTATATTGTTTGTATTGAGTGGAGGAGTATCAACAATAGCCCTCACGTTATACATCTTTAATGCTCATAACCTCAATTTTCAACAGAATACCATTTGGAGATTAATGATAGCTATAATGAGACACTGGGGAAACCAGAGGAGGCGATTTTCTCGACGAGTAAGCGATGAGTCGCAAATGACTGTCTCCAATAACTTCTCGAACGACACCAACTTGCAAATTCAAGTCCAGTAA 2532 39.89 MDDSRNGKIGVIVDTSSRIGKEEILAMQMAVEDFNSFRNKSFSLVIRDYKNDPNLAALAANDLIYMQRVQVLIGPQTWEATSVVAEVGDEKQIPVLALVNEIPKYANKRFKFLVEASPSQLNQMRAIAGIVSSWDWHLVNVIYEDKDLSTTGIFPHLVHALRDVGAEVSEFVGLSQFDSDLFSKELERLRRGSSRIFVVHMSFKSAMRLFEMAKEMGMMGKDYVWIATDSFTNLAYSLNFSSNTLLQGVVGVKSFFPENNPSFHEFYNRFSQRFRLEHSDEDNHEPGIFAIRAYDAARTVAMAMSEMQEKGNHLMEKIELTDFQGLSGKIQFKDRQLASSDTFQIINVMGRSYRELGFWSNKLGFSRELRENSSSSSSMKDLVEVLWPGGSSTTPRGWVVPTDATPLRIGVPTSSMFKEYVHVEEDPMGNNLSFNGLAIDLFKATLDNLNFSLPYQFFRFDGPYDDLVEQIYQKNFDAAVGDIAILSRRYKHAEFTHPYSEAGLVMVVPTTKDTSNRALMFTKPFTVTMWFAIALMNVYNGFVVWFIERNRYPGHEGSMFNQAGTMLCSSFTTLFSLHGNMLHSNLSRMTMVVWLFMALVITQIYTANLTSMLTIQKLEPTVTDIETLQRANALVGFGRGSFVKRYLEEVLHFRSENIRNYSTPDDYAEALRNKEIAAAFLEVPFVKIFLARFCREFMVSGPTYKVGGFGFAFPRGSPMLTDINKALLKVSETGKFRDLEDSMIANEKCEDEDSKGEKSSLSPSSFFILFVLSGGVSTIALTLYIFNAHNLNFQQNTIWRLMIAIMRHWGNQRRRFSRRVSDESQMTVSNNFSNDTNLQIQVQ 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4664112 4667529 + MELO3C025624.2.1 Cme07g00554 332570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00554 843 SUPERFAMILY Periplasmic binding protein-like II 383 741 - -
Cme07g00554 843 PANTHER GLUTAMATE RECEPTOR 5 834 - -
Cme07g00554 843 CDD GluR_Plant 406 744 - -
Cme07g00554 843 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 5 834 - -
Cme07g00554 843 SUPERFAMILY Periplasmic binding protein-like I 8 399 IPR028082 -
Cme07g00554 843 Pfam Ligand-gated ion channel 741 774 IPR001320 GO:0015276|GO:0016020
Cme07g00554 843 CDD PBP1_GABAb_receptor_plant 8 369 IPR044440 -
Cme07g00554 843 Pfam Bacterial extracellular solute-binding proteins, family 3 431 740 IPR001638 -
Cme07g00554 843 Pfam Receptor family ligand binding region 25 348 IPR001828 -
Cme07g00554 843 Gene3D - 407 518 - -
Cme07g00554 843 Gene3D - 125 284 - -
Cme07g00554 843 PIRSF IGluLR_plant 2 842 IPR017103 -
Cme07g00554 843 Gene3D - 689 751 - -
Cme07g00554 843 Gene3D - 519 661 - -
Cme07g00554 843 Gene3D - 296 406 - -
Cme07g00554 843 Gene3D - 5 124 - -
Cme07g00554 843 SMART GluR_14 408 746 IPR001320 GO:0015276|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00554 - - - csv:101210201 1528.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02051 Cme-Chr3:27996761 Cme07g00554 Cme-Chr7:4664112 1.36E-109 dispersed
Cme03g02052 Cme-Chr3:28008233 Cme07g00554 Cme-Chr7:4664112 2.84E-107 dispersed
Cme07g00552 Cme-Chr7:4647588 Cme07g00554 Cme-Chr7:4664112 0 dispersed
Cme07g00554 Cme-Chr7:4664112 Cme03g01552 Cme-Chr3:24614040 1.30E-132 dispersed
Cme07g00553 Cme-Chr7:4655462 Cme07g00554 Cme-Chr7:4664112 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g146 Blo03g00681 . . . . . . . . . . . . . . . . Bhi09g03482 Tan01g4350 . . Hepe01g1420 Mch11g1030 . Cla11g01726 Cam11g1796 Cec11g1817 Cco11g1823 Clacu11g1955 Cmu11g1765 Cre11g2173 . . . . Lsi04g02034 Csa04g02306 Chy07g00042 Cme07g00554 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00554 Cme_Chr07 FPKM 28.336258 32.285385 28.9911 34.585983 29.004654 30.170238 27.638908 28.39868 29.123503 33.418064