Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme07g00574 | ATGGCTGCCGGAGACCGGTCGACATCCGCCGCGCCGCCCAATTCCAAAGAGATCCGCTACAGAGGCGTCAGAAAGAGGCCGTGGGGTCGCTACGCTGCCGAAATCCGGGACCCACGTAAGAAGACTAGGGTTTGGCTTGGCACATTCAATACTGCGGAAGAAGCGGCGCGTGCTTACGACACGGCTGCGCGTGAATTCAGAGGCGCTAATGCCAAAACTAATTTCCCTGTTCAAAACGATTTCCTAATCGTTGATAACAACCACACCAACTTCCATAAATCCGCTTGCAGTAGTAGTCCCAGCCACAGCAGCACCGTCGAGTCCTCTTCCCCATCGCCAACGCCGTCGAATCCTTACCTCGACGGAGGCATCCACGCGCCAGGCATTTCCCGTCCAATTTTCTTCTTCGATGCGTTTGCTCAGGCGGAGAAGATCAGTGACTTTCGTCGTACCGTTACCGCCGCCGCCGCCGGTGCAAGCGACTCCGATTCGTCATCTGTAGTTGATTTCGACACTACGCGAAAATCCCGGCCGTTGGATTTTGACCTCAATCTCCCAGCTGTGGAAGTTGTTTGA | 576 | 55.21 | MAAGDRSTSAAPPNSKEIRYRGVRKRPWGRYAAEIRDPRKKTRVWLGTFNTAEEAARAYDTAAREFRGANAKTNFPVQNDFLIVDNNHTNFHKSACSSSPSHSSTVESSSPSPTPSNPYLDGGIHAPGISRPIFFFDAFAQAEKISDFRRTVTAAAAGASDSDSSSVVDFDTTRKSRPLDFDLNLPAVEVV | 191 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 4927492 | 4928621 | + | MELO3C025608.2.1 | Cme07g00574 | 332590 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme07g00574 | 191 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 1 | 114 | - | - | |
Cme07g00574 | 191 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 125 | 180 | - | - | |
Cme07g00574 | 191 | MobiDBLite | consensus disorder prediction | 93 | 123 | - | - | |
Cme07g00574 | 191 | Gene3D | AP2/ERF domain | 18 | 78 | IPR036955 | GO:0003700|GO:0006355 | |
Cme07g00574 | 191 | SUPERFAMILY | DNA-binding domain | 19 | 78 | IPR016177 | GO:0003677 | |
Cme07g00574 | 191 | SMART | rav1_2 | 19 | 82 | IPR001471 | GO:0003700|GO:0006355 | |
Cme07g00574 | 191 | ProSiteProfiles | AP2/ERF domain profile. | 19 | 76 | IPR001471 | GO:0003700|GO:0006355 | |
Cme07g00574 | 191 | MobiDBLite | consensus disorder prediction | 93 | 117 | - | - | |
Cme07g00574 | 191 | PANTHER | ERF FAMILY PROTEIN | 125 | 180 | - | - | |
Cme07g00574 | 191 | PANTHER | ERF FAMILY PROTEIN | 1 | 114 | - | - | |
Cme07g00574 | 191 | Pfam | AP2 domain | 19 | 68 | IPR001471 | GO:0003700|GO:0006355 | |
Cme07g00574 | 191 | PRINTS | Ethylene responsive element binding protein signature | 20 | 31 | IPR001471 | GO:0003700|GO:0006355 | |
Cme07g00574 | 191 | PRINTS | Ethylene responsive element binding protein signature | 42 | 58 | IPR001471 | GO:0003700|GO:0006355 | |
Cme07g00574 | 191 | CDD | AP2 | 19 | 78 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme06g02844 | Cme-Chr6:35914585 | Cme07g00574 | Cme-Chr7:4927492 | 2.18E-28 | dispersed | |
Cme07g00574 | Cme-Chr7:4927492 | Cme12g01328 | Cme-Chr12:21312226 | 1.06E-29 | dispersed | |
Cme07g00574 | Cme-Chr7:4927492 | Cme11g01515 | Cme-Chr11:22406414 | 2.48E-33 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41624 | PF00847 | AP2 | 3.80E-14 | CL0081 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme07g00574 | K09286 | - | csv:101213540 | 296.204 |