Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00574 ATGGCTGCCGGAGACCGGTCGACATCCGCCGCGCCGCCCAATTCCAAAGAGATCCGCTACAGAGGCGTCAGAAAGAGGCCGTGGGGTCGCTACGCTGCCGAAATCCGGGACCCACGTAAGAAGACTAGGGTTTGGCTTGGCACATTCAATACTGCGGAAGAAGCGGCGCGTGCTTACGACACGGCTGCGCGTGAATTCAGAGGCGCTAATGCCAAAACTAATTTCCCTGTTCAAAACGATTTCCTAATCGTTGATAACAACCACACCAACTTCCATAAATCCGCTTGCAGTAGTAGTCCCAGCCACAGCAGCACCGTCGAGTCCTCTTCCCCATCGCCAACGCCGTCGAATCCTTACCTCGACGGAGGCATCCACGCGCCAGGCATTTCCCGTCCAATTTTCTTCTTCGATGCGTTTGCTCAGGCGGAGAAGATCAGTGACTTTCGTCGTACCGTTACCGCCGCCGCCGCCGGTGCAAGCGACTCCGATTCGTCATCTGTAGTTGATTTCGACACTACGCGAAAATCCCGGCCGTTGGATTTTGACCTCAATCTCCCAGCTGTGGAAGTTGTTTGA 576 55.21 MAAGDRSTSAAPPNSKEIRYRGVRKRPWGRYAAEIRDPRKKTRVWLGTFNTAEEAARAYDTAAREFRGANAKTNFPVQNDFLIVDNNHTNFHKSACSSSPSHSSTVESSSPSPTPSNPYLDGGIHAPGISRPIFFFDAFAQAEKISDFRRTVTAAAAGASDSDSSSVVDFDTTRKSRPLDFDLNLPAVEVV 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4927492 4928621 + MELO3C025608.2.1 Cme07g00574 332590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00574 191 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 114 - -
Cme07g00574 191 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 125 180 - -
Cme07g00574 191 MobiDBLite consensus disorder prediction 93 123 - -
Cme07g00574 191 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Cme07g00574 191 SUPERFAMILY DNA-binding domain 19 78 IPR016177 GO:0003677
Cme07g00574 191 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Cme07g00574 191 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Cme07g00574 191 MobiDBLite consensus disorder prediction 93 117 - -
Cme07g00574 191 PANTHER ERF FAMILY PROTEIN 125 180 - -
Cme07g00574 191 PANTHER ERF FAMILY PROTEIN 1 114 - -
Cme07g00574 191 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Cme07g00574 191 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Cme07g00574 191 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Cme07g00574 191 CDD AP2 19 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02844 Cme-Chr6:35914585 Cme07g00574 Cme-Chr7:4927492 2.18E-28 dispersed
Cme07g00574 Cme-Chr7:4927492 Cme12g01328 Cme-Chr12:21312226 1.06E-29 dispersed
Cme07g00574 Cme-Chr7:4927492 Cme11g01515 Cme-Chr11:22406414 2.48E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41624 PF00847 AP2 3.80E-14 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00574 K09286 - csv:101213540 296.204