Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00580 ATGTCTGATGTGGCGAGTATAGCAGAGGCAGTGGCAGCAAGATTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTTGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAAAAGGAAATTTCTGTTTTGTCACAATGTCGATCACCCTACATTACTGAGTACTATGGTTCTTATCTACACCAGACGAAATTATGGATAATAATGGAATATATGGCTGGTGGCTCTGTTGCAGATCTGCTTCAGTCTGGGCCACCGCTCGATGAAATGTCAATTGCATGCATTCTACGGGATTTGCTGCATGCAATTGATTATTTGCACACCGAGGGAAAAATCCACAGGGACATTAAAGCGGCAAACATTTTACTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAGTTAACAAGGACAATATCGAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCGCCAGAGGTAATTCAGAACTCTGAAGGATATAATGAAAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGAGTTCTTTTTATCATACCTCGGGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGGCCAATGAAAGAATTAGTGTCACTATGTCTGAAGAAAATACCTGCTGAGAGACCTAGTGCCAAAGAGCTTCTGAAGCACCGATTCATTAAGAATGCCAGGAAGAGTCCTAGGCTTCTGGAGAGAATAAGAGAGCGCCCAAAGTACCAAATAAAGGAAGAAGATGCAGAAACACCAACAAATGGTTCTAGAGCTATGGGTGAAACGACAGACACTGTGAAAGTATCAAGAAATGTGAGGGAGGAAACTGTTCGTGCCAGCAACCAGAGTAAAGCTCCAAAGAATGCTGGATGGGACTTTAGTATTGGGGGACCACATAGTACAGGTACTGTTCGAAGTGTAGTAAAACCACCTCAAATTAGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGGTGCACCTAGTAGAGTTGCAGAGAGTGGTAACTGGCTAGCTGTGTCTGGATATGCATCACGCGACGTATCAGAAAACACCAGAGATTCATACAGTATGGGAGATGCTAGTGAAGATGAAGAGCTATCTGTAAGTGGTTCAGGAACCGTTGTGATCCGGTCTCCGAGGGGATCTCAAGCATCTACTCAATTTCACAATGAAAGCAGTCCGTCTGGAAGTGCACAAGGATATTTTGAGGACACATCTTTTAGTGGTACTGTTGTTATGCGTGGTCAACGTGATGATTCTGGTTCTCCTCAGACTCCAAAATCCAGAATGGGAATTCAAGAAAGGACTTCAAGCTTTTCTCCCGAAGATAGTGCATCAAACCTTGCGGAGGCAAAGGCTGCAATACAAGCAGGATTGAAGAAATCTAATGCAAGGGATAGATCAGCTATCAATAAACTCAACGACAGGAAGGAAAATAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCAAGGCATTCTCGTGAATTCTTTGATGCGCCAAGAGCATTGGTAAAACCATCTCTATCACTTGATGAGGAAGAAAGTGCAAAAATAGCATTGTCTTCTGCACCGTTATCGGTTTTATTTATGTCATCCTTGAAAGAGGTAGTTGCAGATGATTCGGAAGGATCACCTTCTCGGACTGTAATTAATGCACTTATAAATATGGAACACCTAAAACCTGGATCATGCGAGGTTCTTGCCACTAAGTTGCTCCAGAAATTGGCCAGTTCCAAGGAATCTTCACTGAAGGATTTACAAGACTTGGCAACTCGCTTATTCAATAAGGCAAAGACCGTTCCTGAAGATACACAAAATGTCACAGATTCTGATAATAGCAAAAAGCTACCGAACAGGGAACTTCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTGTCAAGGGATCTGAGTCCAGCTTAA 2088 42.29 MSDVASIAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHTEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIKNARKSPRLLERIRERPKYQIKEEDAETPTNGSRAMGETTDTVKVSRNVREETVRASNQSKAPKNAGWDFSIGGPHSTGTVRSVVKPPQIRERKPEIPYGQGAPSRVAESGNWLAVSGYASRDVSENTRDSYSMGDASEDEELSVSGSGTVVIRSPRGSQASTQFHNESSPSGSAQGYFEDTSFSGTVVMRGQRDDSGSPQTPKSRMGIQERTSSFSPEDSASNLAEAKAAIQAGLKKSNARDRSAINKLNDRKENRRTEQTVSSSDSSRHSREFFDAPRALVKPSLSLDEEESAKIALSSAPLSVLFMSSLKEVVADDSEGSPSRTVINALINMEHLKPGSCEVLATKLLQKLASSKESSLKDLQDLATRLFNKAKTVPEDTQNVTDSDNSKKLPNRELHSNSNLSSLARFLLSRWQGQVSRDLSPA 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4976665 4992260 - MELO3C025602.2.1 Cme07g00580 332596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00580 695 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00580 695 MobiDBLite consensus disorder prediction 509 528 - -
Cme07g00580 695 MobiDBLite consensus disorder prediction 410 489 - -
Cme07g00580 695 MobiDBLite consensus disorder prediction 287 373 - -
Cme07g00580 695 SUPERFAMILY Protein kinase-like (PK-like) 13 326 IPR011009 -
Cme07g00580 695 MobiDBLite consensus disorder prediction 646 668 - -
Cme07g00580 695 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00580 695 CDD STKc_MST3_like 14 287 - -
Cme07g00580 695 Gene3D Transferase(Phosphotransferase) domain 1 12 303 - -
Cme07g00580 695 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 693 - -
Cme07g00580 695 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 693 - -
Cme07g00580 695 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Cme07g00580 695 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00580 695 MobiDBLite consensus disorder prediction 388 539 - -
Cme07g00580 695 Coils Coil 41 68 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g02055 Cme-Chr5:28855837 Cme07g00580 Cme-Chr7:4976665 1.68E-44 dispersed
Cme07g00580 Cme-Chr7:4976665 Cme09g00387 Cme-Chr9:3475453 4.75E-71 dispersed
Cme12g01812 Cme-Chr12:24587517 Cme07g00580 Cme-Chr7:4976665 3.37E-40 dispersed
Cme07g00580 Cme-Chr7:4976665 Cme06g00521 Cme-Chr6:3294460 8.55E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65006 PF00069 Pkinase 6.40E-68 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00580 K08838 - csv:101214412 1329.69