Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00580 ATGTCTGATGTGGCGAGTATAGCAGAGGCAGTGGCAGCAAGATTTAGTTCTTTGGAGCTTATTGGAAGAGGATCTTTTGGTGATGTCTACAAGGGGTTTGACAAGGAGCTTAACAAAGAAGTTGCTATCAAAGTTATTGATTTGGAAGAATCTGAGGATGAAATTGAGGATATTCAAAAGGAAATTTCTGTTTTGTCACAATGTCGATCACCCTACATTACTGAGTACTATGGTTCTTATCTACACCAGACGAAATTATGGATAATAATGGAATATATGGCTGGTGGCTCTGTTGCAGATCTGCTTCAGTCTGGGCCACCGCTCGATGAAATGTCAATTGCATGCATTCTACGGGATTTGCTGCATGCAATTGATTATTTGCACACCGAGGGAAAAATCCACAGGGACATTAAAGCGGCAAACATTTTACTGAGTGAAAATGGTGATGTTAAGGTTGCAGATTTTGGTGTTTCTGCTCAGTTAACAAGGACAATATCGAGGAGAAAGACATTTGTAGGAACTCCATTCTGGATGGCGCCAGAGGTAATTCAGAACTCTGAAGGATATAATGAAAAGGCAGACATCTGGTCTCTAGGAATCACTGCTATTGAAATGGCAAAAGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGAGTTCTTTTTATCATACCTCGGGAAAATCCACCTCAGTTGGATGAACATTTTTCTCGGCCAATGAAAGAATTAGTGTCACTATGTCTGAAGAAAATACCTGCTGAGAGACCTAGTGCCAAAGAGCTTCTGAAGCACCGATTCATTAAGAATGCCAGGAAGAGTCCTAGGCTTCTGGAGAGAATAAGAGAGCGCCCAAAGTACCAAATAAAGGAAGAAGATGCAGAAACACCAACAAATGGTTCTAGAGCTATGGGTGAAACGACAGACACTGTGAAAGTATCAAGAAATGTGAGGGAGGAAACTGTTCGTGCCAGCAACCAGAGTAAAGCTCCAAAGAATGCTGGATGGGACTTTAGTATTGGGGGACCACATAGTACAGGTACTGTTCGAAGTGTAGTAAAACCACCTCAAATTAGGGAAAGAAAACCAGAAATTCCTTATGGTCAGGGTGCACCTAGTAGAGTTGCAGAGAGTGGTAACTGGCTAGCTGTGTCTGGATATGCATCACGCGACGTATCAGAAAACACCAGAGATTCATACAGTATGGGAGATGCTAGTGAAGATGAAGAGCTATCTGTAAGTGGTTCAGGAACCGTTGTGATCCGGTCTCCGAGGGGATCTCAAGCATCTACTCAATTTCACAATGAAAGCAGTCCGTCTGGAAGTGCACAAGGATATTTTGAGGACACATCTTTTAGTGGTACTGTTGTTATGCGTGGTCAACGTGATGATTCTGGTTCTCCTCAGACTCCAAAATCCAGAATGGGAATTCAAGAAAGGACTTCAAGCTTTTCTCCCGAAGATAGTGCATCAAACCTTGCGGAGGCAAAGGCTGCAATACAAGCAGGATTGAAGAAATCTAATGCAAGGGATAGATCAGCTATCAATAAACTCAACGACAGGAAGGAAAATAGAAGAACAGAGCAAACAGTGAGTAGCTCTGACTCTTCAAGGCATTCTCGTGAATTCTTTGATGCGCCAAGAGCATTGGTAAAACCATCTCTATCACTTGATGAGGAAGAAAGTGCAAAAATAGCATTGTCTTCTGCACCGTTATCGGTTTTATTTATGTCATCCTTGAAAGAGGTAGTTGCAGATGATTCGGAAGGATCACCTTCTCGGACTGTAATTAATGCACTTATAAATATGGAACACCTAAAACCTGGATCATGCGAGGTTCTTGCCACTAAGTTGCTCCAGAAATTGGCCAGTTCCAAGGAATCTTCACTGAAGGATTTACAAGACTTGGCAACTCGCTTATTCAATAAGGCAAAGACCGTTCCTGAAGATACACAAAATGTCACAGATTCTGATAATAGCAAAAAGCTACCGAACAGGGAACTTCATTCAAATTCTAATTTGAGCTCGCTTGCTAGATTTTTACTCTCCAGATGGCAAGGTCAGGTGTCAAGGGATCTGAGTCCAGCTTAA 2088 42.29 MSDVASIAEAVAARFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLHQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHTEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKELVSLCLKKIPAERPSAKELLKHRFIKNARKSPRLLERIRERPKYQIKEEDAETPTNGSRAMGETTDTVKVSRNVREETVRASNQSKAPKNAGWDFSIGGPHSTGTVRSVVKPPQIRERKPEIPYGQGAPSRVAESGNWLAVSGYASRDVSENTRDSYSMGDASEDEELSVSGSGTVVIRSPRGSQASTQFHNESSPSGSAQGYFEDTSFSGTVVMRGQRDDSGSPQTPKSRMGIQERTSSFSPEDSASNLAEAKAAIQAGLKKSNARDRSAINKLNDRKENRRTEQTVSSSDSSRHSREFFDAPRALVKPSLSLDEEESAKIALSSAPLSVLFMSSLKEVVADDSEGSPSRTVINALINMEHLKPGSCEVLATKLLQKLASSKESSLKDLQDLATRLFNKAKTVPEDTQNVTDSDNSKKLPNRELHSNSNLSSLARFLLSRWQGQVSRDLSPA 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4976665 4992260 - MELO3C025602.2.1 Cme07g00580 332596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00580 695 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00580 695 MobiDBLite consensus disorder prediction 509 528 - -
Cme07g00580 695 MobiDBLite consensus disorder prediction 410 489 - -
Cme07g00580 695 MobiDBLite consensus disorder prediction 287 373 - -
Cme07g00580 695 SUPERFAMILY Protein kinase-like (PK-like) 13 326 IPR011009 -
Cme07g00580 695 MobiDBLite consensus disorder prediction 646 668 - -
Cme07g00580 695 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00580 695 CDD STKc_MST3_like 14 287 - -
Cme07g00580 695 Gene3D Transferase(Phosphotransferase) domain 1 12 303 - -
Cme07g00580 695 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 693 - -
Cme07g00580 695 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 693 - -
Cme07g00580 695 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Cme07g00580 695 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00580 695 MobiDBLite consensus disorder prediction 388 539 - -
Cme07g00580 695 Coils Coil 41 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00580 K08838 STK24_25_MST4; serine/threonine-protein kinase 24/25/MST4 [EC:2.7.11.1] - csv:101214412 1329.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g02055 Cme-Chr5:28855837 Cme07g00580 Cme-Chr7:4976665 1.68E-44 dispersed
Cme07g00580 Cme-Chr7:4976665 Cme09g00387 Cme-Chr9:3475453 4.75E-71 dispersed
Cme12g01812 Cme-Chr12:24587517 Cme07g00580 Cme-Chr7:4976665 3.37E-40 dispersed
Cme07g00580 Cme-Chr7:4976665 Cme06g00521 Cme-Chr6:3294460 8.55E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g189 . . . . . . . . . . Cma01g01216 Cma09g00851 Car01g01040 Car09g00765 . Cpe06g00678 Cpe02g00695 Bhi09g03449 . . . . Mch11g1051 . Cla11g01746 Cam11g1814 Cec11g1834 Cco11g1840 Clacu11g1974 Cmu11g1784 Cre11g2191 Cone6ag0161 Cone9ag0187 Cone14ag1056 . Lsi04g02056 Csa04g02327 Chy07g00059 Cme07g00580 . . . . . . . . . Cmo01g01271 Cmo09g00844 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme07g00580 . 1 693 MAP Kinase Kinase Kinase Kinase AT1G53165 63.1 1.2e-223 773.1
Cme07g00580 . 1 692 MAP Kinase Kinase Kinase Kinase AT3G15220 64.9 4.6e-231 797.7
Cme07g00580 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 2.9e-67 253.8
Cme09g00387 . 1 664 MAP Kinase Kinase Kinase Kinase AT5G14720 66.3 4.6e-252 867.5
Cme04g01751 . 3 551 MAP Kinase Kinase Kinase Kinase AT5G14720 51.4 1.1e-149 527.3
Cme06g00521 CCT 32 384 MAP Kinase Kinase Kinase Kinase AT5G14720 51.1 5.5e-96 349.0
Cme06g02394 . 7 719 MAP Kinase Kinase Kinase Kinase AT4G24100 64.8 1.7e-247 852.4
Cme04g01751 . 2 348 MAP Kinase Kinase Kinase Kinase AT4G24100 62.2 4.1e-129 459.1
Cme06g02394 . 11 720 MAP Kinase Kinase Kinase Kinase AT4G10730 65.3 5.4e-248 854.0
Cme04g01751 . 4 362 MAP Kinase Kinase Kinase Kinase AT1G70430 61.8 3.6e-131 465.7
Cme06g02394 . 3 369 MAP Kinase Kinase Kinase Kinase AT1G70430 57.3 2.4e-119 426.4
Cme04g01751 . 1 570 MAP Kinase Kinase Kinase Kinase AT1G79640 65.0 2.0e-199 692.6
Cme09g00387 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.9 5.7e-103 371.7
Cme04g01751 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 9.8e-87 317.8
Cme06g02394 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.5 1.3e-75 280.8
Cme06g00521 CCT 32 495 MAP Kinase Kinase Kinase Kinase AT4G14480 58.0 3.7e-142 501.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005838 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65006 PF00069 Pkinase 6.40E-68 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00580 Cme_Chr07 FPKM 64.700989 74.227486 2.575071 2.336113 1.188022 0.972374 1.347448 0.21625 0.30926 0.269689