Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme07g00584 | ATGACTGGAAAAGAGATTCTCCACAAGATGAAGGAAAAAGTTGGGCTGTGCTCGTCCGATCCAGACTCGGGAAAAGGAAAGAGCAAGATGTCCAAGCATGTCACACATGGCTTTCACCTGGTGGAAGGGAAATCAAATCATGCCATGGAAGATTATTTCGTTGCAGAGTTTAAGCAAGTTGATCATCATGAGCTTGGTTTATTTGCAATCTTCGATGGCCATTTGAGCAATTCTATTCCTGATTATTTACGGTCACACTTATTTTCTAATATAATAAATGAGCCTGATTTCTGGACCGATCCAAAGAATGCTGTTAGGAAAGCATACGAGCAAACTGATGCTTACATTTTAGAGAAAGCTGTTGATTTTAGTCATGGAGGTTCAACCGCTGTCACAGCCATATTGATTGACTGTAAGACACTAGTAGTGGGCAATGTGGGGGACTCCCGTGCCGTTATTTGTATTAAAGGAAAGGCCAAACAATTATCAATTGATCATGAGCCAAGCGTTGAAAGAAAAAGCATTGAGGACAGAGGTGGTTTTGTATCGAACTTCCCTGGAGACGTTCCACGTGTTGATGGGCAGTTGGCGGTTGCAAGGGCATTTGGTGATAGGAGCTTAAAGAAACATTTGAGTTCAGAGCCTTATGTGGTAGAGGAGACAGTAGATGACGATACCGAATTTGTTATCTTAGCAAGCGATGGATTGTGGAAGGTCATGTCAAACGAAGAAGCCGTGGAGTCAATCATGCATATAAAAGACGCCCAGGCAGCTGCGAAACACCTGACAGAGGAGGCCCTCAAAAGGAAGAGCAAAGATGATATCTCTTGTATAGTTGTGAGATTTCACTGA | 852 | 42.84 | MTGKEILHKMKEKVGLCSSDPDSGKGKSKMSKHVTHGFHLVEGKSNHAMEDYFVAEFKQVDHHELGLFAIFDGHLSNSIPDYLRSHLFSNIINEPDFWTDPKNAVRKAYEQTDAYILEKAVDFSHGGSTAVTAILIDCKTLVVGNVGDSRAVICIKGKAKQLSIDHEPSVERKSIEDRGGFVSNFPGDVPRVDGQLAVARAFGDRSLKKHLSSEPYVVEETVDDDTEFVILASDGLWKVMSNEEAVESIMHIKDAQAAAKHLTEEALKRKSKDDISCIVVRFH | 283 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 5037343 | 5040535 | + | MELO3C025598.2.1 | Cme07g00584 | 332600 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme07g00584 | 283 | CDD | PP2Cc | 43 | 282 | IPR001932 | - | |
| Cme07g00584 | 283 | SUPERFAMILY | PP2C-like | 31 | 283 | IPR036457 | - | |
| Cme07g00584 | 283 | ProSiteProfiles | PPM-type phosphatase domain profile. | 35 | 282 | IPR001932 | - | |
| Cme07g00584 | 283 | SMART | PP2C_4 | 31 | 280 | IPR001932 | - | |
| Cme07g00584 | 283 | Gene3D | - | 30 | 283 | IPR036457 | - | |
| Cme07g00584 | 283 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 282 | IPR015655 | GO:0004722|GO:0006470 | |
| Cme07g00584 | 283 | Pfam | Protein phosphatase 2C | 47 | 275 | IPR001932 | - | |
| Cme07g00584 | 283 | PANTHER | PROTEIN PHOSPHATASE 2C 39-RELATED | 1 | 282 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cme07g00584 | Cme07g01286 | CCT | |
| Cme07g00584 | Cme07g01286 | ECH | |
| Cme07g01286 | Cme07g00584 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme01g00303 | Cme-Chr1:2267534 | Cme07g00584 | Cme-Chr7:5037343 | 2.99E-130 | dispersed | |
| Cme05g00581 | Cme-Chr5:5905674 | Cme07g00584 | Cme-Chr7:5037343 | 3.31E-33 | dispersed | |
| Cme07g00150 | Cme-Chr7:961248 | Cme07g00584 | Cme-Chr7:5037343 | 1.51E-68 | dispersed | |
| Cme07g00584 | Cme-Chr7:5037343 | Cme08g00077 | Cme-Chr8:529928 | 6.75E-104 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme07g00584 | K17506 | - | csv:101215129 | 542.732 |