Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00669 ATGGCATCAAGTGTTGATGAAGATGATAGGGAGCCAGCCATGGAGTCTGGCGAAGCTGATGAAGAAATAGTTGTCCGAGAAGTCTGTGCAAATGGAATCAGCATAAAAACAACAGAAGTAGAAGCAAAGCTCGATGAGGGAAATATCCAAGAGGCAGAATCTTCATTACGGGAAGGGTTATCTCTCAATTTTGAGGAAGCCAGAGCCCTTCTTGGGAAGTTGGAATATCAGAGAGGTAACGTTGAAGGTGCCCTACGTGTGTTTGATGGTATTGATCTCCAAGCAGCTATTCAACGATTACAGCCTTGCATTGCTGAGAAGACACCACCAAAAAAAGGACGTTTGCGCTCTGAATCTCAACATGCAGTTTCACAGCATGCTGCAAACCTGGTTCTTGAAGCCATATATTTAAAAGTGAAGTCTCTTCAGAAGCTAGGGAGAGTAACTGAGGCTGCTGATGAGTGTACTAGTGTACTTGATGCTGTAGAGAAGATATTCCACCAAGGAATTCCTGACGGGCAAGTGGATAGTAGATTGCAAGATACTGTCAGTCAGGCTGTAGAACTCCTCCCTGAGCTATGGAAGCAGGCTGGCTGTTTTCAGGAAGCAATATCTGCCTATAGACGTGCCCTCCTAAGCCAATGGAACCTCAACAATGAAAGCTGTGCTAGGATCCAGAAAGGATTTGCTGTGTTCTTGCTTTACAGTGGAGTAGAGGCTGGTCCTCCTAGTTTAGCTGTTCAACTTGAAGGTTCATATGTACCAAAAAATAATTTGGAAGAAGCCATTCTACTTTTGATGGTTCTTGTGAAGAAATGTTACCTTGGTAAGATAAAATGGGATCCGTCAGTGATGGAGCACCTAATATATGCTCTATCCTTATGCAGCCAGACTTCTGTTTTAGCGAAACAACTTGAAGAGGTCATGCCTGGAGTATATCACCGTGTAGATCGTTGGAAGTCTTTAGCTCTTTGTTATTGTGCAGCAGGACAGAATAAAGTTGCCTTAAATCTTCTGAGAAAATCTCTACACAAACACGAGCAACCAGATGATGTGGCAGCCTTATTATTGGCTGCCAAGATCTGTAGCGAGGATCCTTATCTCGCTGCTGAAGGTGTTGGTTATGCCCAGCGGGCAATGAGCAATTGTATAGAAAATGAAGAGCATTTAAAGGGTGTGGGTCTTCGCTTGTTAGGTCTTTGTTTGGGAAAACAAGCCAAAATGTCTTCCTCAGACTTTGAGAGGTCCCGTCTTCAGTCAGAGGCGTTGAAATCTCTTGAGGCAGCAAGTGGACTGGAGAGCAATAACTTAGATTTGATGCTTGAGTTAGGAGTACAGTATTCAGAATATCGGAATTTGAACGCTGCTCTGCAATATGCAAAGAAGTTTATTGATGAAACTGGTGGCTCCGTCTTAAAAGGCTGGCAGTTGCTTGCTCTTGTTTTGTCTGCCCAGAAGAGATTTTCTGAGGCTGAAGTGGTCACTGATGCTGCAATGGATGAAACCACAAAATGGGAACAAGGACCACTTCTCAGACTTAAGGCGAAGCTGAAGGTCTCCCAATCATTACATATGGATGCCATTGAAACTTACCGTTATCTCCTTGCATTAGTTCAAGCCCAAAAGAAATCATTTGGGCCTCTCCGAATTGTCCCTCAGGTTGAAGATGATAAAGTGAATGAGTTTGAAGTGTGGAATGGTCTAGCCAATTTGTACTCCAGCCTTTCACATTGGAAAGATGCGGAGATATGCCTAGGAAAAGCAAGAGAGCTGAAAGAGTTCTCCCCAGAAGTACTACATACTGAAGGTCTAATGTGCGAAGGACGTGAGAAAATACAAGAAGCTCTAGCTGCTTATATTAACGCTCTCCTACTCGAACCAACTTATGTTCCTTGCAAGGTTTTGATTGGTGCTCTTTGGTCGAAAGCTGGCCCGGATGCATTGCCTATAGCAAGAAGCTTACTTTCAGACGCATTGAGATTGGATCCTACCAACCGTAAGGCTTGGTTTTACTTGGGGGTCATTCATCGGGACGAAGGACGAATGGCTGATGCTATAGACTGTTTCCAGGCAGCCGCCATGCTTGAAGAATCGGATCCCATTGAAAGCTTCAGCAGTGTTCTCTAG 2127 44.15 MASSVDEDDREPAMESGEADEEIVVREVCANGISIKTTEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPCIAEKTPPKKGRLRSESQHAVSQHAANLVLEAIYLKVKSLQKLGRVTEAADECTSVLDAVEKIFHQGIPDGQVDSRLQDTVSQAVELLPELWKQAGCFQEAISAYRRALLSQWNLNNESCARIQKGFAVFLLYSGVEAGPPSLAVQLEGSYVPKNNLEEAILLLMVLVKKCYLGKIKWDPSVMEHLIYALSLCSQTSVLAKQLEEVMPGVYHRVDRWKSLALCYCAAGQNKVALNLLRKSLHKHEQPDDVAALLLAAKICSEDPYLAAEGVGYAQRAMSNCIENEEHLKGVGLRLLGLCLGKQAKMSSSDFERSRLQSEALKSLEAASGLESNNLDLMLELGVQYSEYRNLNAALQYAKKFIDETGGSVLKGWQLLALVLSAQKRFSEAEVVTDAAMDETTKWEQGPLLRLKAKLKVSQSLHMDAIETYRYLLALVQAQKKSFGPLRIVPQVEDDKVNEFEVWNGLANLYSSLSHWKDAEICLGKARELKEFSPEVLHTEGLMCEGREKIQEALAAYINALLLEPTYVPCKVLIGALWSKAGPDALPIARSLLSDALRLDPTNRKAWFYLGVIHRDEGRMADAIDCFQAAAMLEESDPIESFSSVL 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5719008 5725583 - MELO3C026385.2.1 Cme07g00669 332685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00669 708 SMART tpr_5 666 699 IPR019734 GO:0005515
Cme07g00669 708 SMART tpr_5 596 629 IPR019734 GO:0005515
Cme07g00669 708 SMART tpr_5 316 349 IPR019734 GO:0005515
Cme07g00669 708 SMART tpr_5 472 505 IPR019734 GO:0005515
Cme07g00669 708 SMART tpr_5 562 595 IPR019734 GO:0005515
Cme07g00669 708 Gene3D Tetratricopeptide repeat domain 243 545 IPR011990 GO:0005515
Cme07g00669 708 Gene3D Tetratricopeptide repeat domain 39 238 IPR011990 GO:0005515
Cme07g00669 708 Gene3D Tetratricopeptide repeat domain 557 639 IPR011990 GO:0005515
Cme07g00669 708 PANTHER CALMODULIN-BINDING PROTEIN 14 707 - -
Cme07g00669 708 MobiDBLite consensus disorder prediction 1 20 - -
Cme07g00669 708 SUPERFAMILY TPR-like 186 465 IPR011990 GO:0005515
Cme07g00669 708 Pfam Tetratricopeptide repeat 651 693 - -
Cme07g00669 708 ProSiteProfiles TPR repeat profile. 666 699 IPR019734 GO:0005515
Cme07g00669 708 Gene3D Tetratricopeptide repeat domain 647 704 IPR011990 GO:0005515
Cme07g00669 708 PANTHER PROTEIN NPG1 14 707 IPR043376 -
Cme07g00669 708 SUPERFAMILY TPR-like 512 697 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00471 Cme-Chr6:2967349 Cme07g00669 Cme-Chr7:5719008 0 dispersed
Cme07g00669 Cme-Chr7:5719008 Cme04g00983 Cme-Chr4:13315816 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00669 K21843 - csv:101206641 1362.05