Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00682 ATGATTATGGAGCAGATAAAATACTTCCTCCTTCAGATCTTTGTTGTTTTAGCCATTTCATTTCTTGTTTCTGCACAGGATCAGTCAGGATTCATCAGCATTGATTGTGGAATTTCAGGGATTTCAAGCTACAAAGACAGTGTAACAAACATAAAGTACATTTCTGATGTAAACTTCACAGAAACTGGAATAAGTAAGAGCATATCATCGGATTTCAACACTACCACTCTTCCACAACAGTTTCGGTATGTTAGAAGCTTTCCCGAAGGAGAAAGAAACTGTTACACCATAAAGCTTGCTCAAGGCAAAGGTTACAAGTATTTGACCAGAGCAAGTTTTATGTATGGAAACTATGATGGTCAAGGTCGTGCTCCAGTTTTCGATCTATACATGGGAGTTGATAAATGGGATACAGTAGTAATGGGGAATGAATCCAACATCATAATCAAAGAAGTTGTACATGTACTTCCTACATCTTCCATATGCATTTGTTTGGTCAATACTGGCTTTGGATCACCTTTTATATCAGCATTGGAGCTTAGGCTTTTAAAAAATGCAAGTTATGCCACTGATTTTGATTTGCTAGCACTCCACAGACGGTTGGACATTGGTTCAACGATCAACAGAACCGTCAGGTACAATGATGACATTTCTGATAGGATCTGGGTGCCTTCTAACTTTCTTAACTATAAAATTATAAGCACTTCATCTACAGTTGATTCGGTAGGTAGCAATTCTTATAATTTACCAAGAATTGTAATGAGAACTGCCATCACAACCTATAACGCTAGTGATCCTCTGGAATTTCGCTGGGCTCCTGAAGATCCCAGTGCTAGATATCATATATTCCTGCACTTTGCTGATTTGGAAAAGCTTCAAGCCAACCAATTAAGGGAATTTAACATCTATCAAAATGGGAATTATTTTCATGGACCTTTCTCTCCTGATTACTTGCAGTCAACTACATTGTTTAGCGTATCCCCATTGAGTGGAGAAAAAATTGCATTTTCATTATCAAAAACTAATGCATCAAATCTTCCTCCCATCCTCAATGCTCTTGAAATCTACTTGGTGCTTGACACGTTGCAATCACGCACCGATGAGCAGGACATTACTGCTTTGATGAACATCAAATCATTTTATGGAGTGAGAAAGAACTGGCAGGGTGATCCATGCCAGCCAAAATCTTTTTTGTGGGATGGTCTTATTTGTAGCTACGATGACCTGAGTCCTAATAGAATCACCACCTTGAACTTATCTTCAAGTGGATTGGTGGGGGAAATAACTACGTATGTATCTGAATTGACATCATTACAATATTTGGATTTGTCGAACAATAACTTGAGTGGACCAGTGCCCGGTTTTCTATCCAAATTGCCGTCCTTGAAAGTTCTAGATTTGAGGGACAATCCACTCCTTGGTTCTATACCAAGCGAACTCATGGAAAGATCGAAGAACGGATCCCTTTCAATAAGGGTTGGAGCTGGAGGAAACACGGATCTTTGTGCTTCATCTTCTTGTCCAAAGAAGAAAAAGAGCTACGTTGTTATAATTGTAGCAATAGTTTCATCGTTTCTTGTCCTCTTAGCTGCAACATCAGTCTTGATAATATTGTGGAGAAAAAGAGCTCGGAAACAGCCCGTCATAAGACTCGGAAAACTAGAGGAAAATAAACAGCAACTATCTTACTCTGAAATACGGCGTATAACAAACAACTTTGAGAGACAAATTGGAGAAGGGGGTTTTTCAAAAGTATTCCTTGGTAATTTGGATGATAGTCAAGTCGCCGTGAAGGTCCTTAAGTCTTCGGTTCAAGGTTATAAAGAATTTGAAGCAGAGGTTAAACTTTTGTTGAGAATTCATCATCGAAACTTGACCAGCCTTGTTGGATACTGCTGCGAAAAAACCAACCTGGTTCTAATTTATGAGTACATAAACAATGGCAACTTAAAAGAGCATCTATCAGGTAGCAAAGCCAGTTTTCTCAGTTGGGAGGAAAGGATGCAAGTAGCAGTCAATTCAGCTCAAGGGTTGGAGTATCTGCATCATGGTTGTAAGCCACCAATTGTTCATAGAGATGTGAAATCTGCAAACATCCTTTTGACTGAAAGATTCCAAGCTAAAATAGCTGATTTTGGTCTATCAAAGAGTTTTCCAACCGAAAGTCGTACTCATATGACGACTGTTGTTGCGGGGACCAATGGTTATCTCGATCCTGAGTATTATGCAACTGGCTGGTTGACTGAGAAAAGTGATGTTTATGGTTTCGGAGTTCTTATATTGGAAATCGTCACTTCCCGTCCAGTCCTGATGATCGACAGAGCTTCTTCACAGAAATATCATATAAGCCAATGGGTTATGCAATTGCTGAAAACGGGTGATATAAGGAGTATTGTTGATCAGAAGGTGAGGGAAAACTTTGACTTGAGTTCTGCTTGGAAGGCAGTGGAGATTGCAATGAAATGTTTGTCATTGAATTCCATTGATAGGCCAAGCATGAAAGAAGTAGTTTCGGAGTTGAGCGAGTGTTTGGCGTTAGAGAAAGCTCGAAAAAGAAGAAATGTTTACTCTGATATGAGAAAATCAAATGCAGTTAGTAGGAATTTCAGAGAGAGTGAAGTAACACCTTTTGCTAGATAG 2640 39.13 MIMEQIKYFLLQIFVVLAISFLVSAQDQSGFISIDCGISGISSYKDSVTNIKYISDVNFTETGISKSISSDFNTTTLPQQFRYVRSFPEGERNCYTIKLAQGKGYKYLTRASFMYGNYDGQGRAPVFDLYMGVDKWDTVVMGNESNIIIKEVVHVLPTSSICICLVNTGFGSPFISALELRLLKNASYATDFDLLALHRRLDIGSTINRTVRYNDDISDRIWVPSNFLNYKIISTSSTVDSVGSNSYNLPRIVMRTAITTYNASDPLEFRWAPEDPSARYHIFLHFADLEKLQANQLREFNIYQNGNYFHGPFSPDYLQSTTLFSVSPLSGEKIAFSLSKTNASNLPPILNALEIYLVLDTLQSRTDEQDITALMNIKSFYGVRKNWQGDPCQPKSFLWDGLICSYDDLSPNRITTLNLSSSGLVGEITTYVSELTSLQYLDLSNNNLSGPVPGFLSKLPSLKVLDLRDNPLLGSIPSELMERSKNGSLSIRVGAGGNTDLCASSSCPKKKKSYVVIIVAIVSSFLVLLAATSVLIILWRKRARKQPVIRLGKLEENKQQLSYSEIRRITNNFERQIGEGGFSKVFLGNLDDSQVAVKVLKSSVQGYKEFEAEVKLLLRIHHRNLTSLVGYCCEKTNLVLIYEYINNGNLKEHLSGSKASFLSWEERMQVAVNSAQGLEYLHHGCKPPIVHRDVKSANILLTERFQAKIADFGLSKSFPTESRTHMTTVVAGTNGYLDPEYYATGWLTEKSDVYGFGVLILEIVTSRPVLMIDRASSQKYHISQWVMQLLKTGDIRSIVDQKVRENFDLSSAWKAVEIAMKCLSLNSIDRPSMKEVVSELSECLALEKARKRRNVYSDMRKSNAVSRNFRESEVTPFAR 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5855008 5860959 + MELO3C026395.2.1 Cme07g00682 332698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00682 879 Gene3D Transferase(Phosphotransferase) domain 1 645 867 - -
Cme07g00682 879 PANTHER OS07G0107800 PROTEIN-RELATED 9 879 - -
Cme07g00682 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 689 701 IPR008271 GO:0004672|GO:0006468
Cme07g00682 879 SUPERFAMILY Protein kinase-like (PK-like) 556 840 IPR011009 -
Cme07g00682 879 CDD STKc_IRAK 577 842 - -
Cme07g00682 879 ProSitePatterns Protein kinases ATP-binding region signature. 577 598 IPR017441 GO:0005524
Cme07g00682 879 Gene3D Ribonuclease Inhibitor 370 492 IPR032675 -
Cme07g00682 879 SUPERFAMILY L domain-like 372 480 - -
Cme07g00682 879 Gene3D Phosphorylase Kinase; domain 1 535 644 - -
Cme07g00682 879 Pfam Protein kinase domain 574 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00682 879 Pfam Malectin-like domain 34 357 IPR024788 -
Cme07g00682 879 PRINTS Leucine-rich repeat signature 438 451 - -
Cme07g00682 879 PRINTS Leucine-rich repeat signature 459 472 - -
Cme07g00682 879 SMART serkin_6 571 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00682 879 Pfam Leucine rich repeat 413 472 IPR001611 GO:0005515
Cme07g00682 879 ProSiteProfiles Protein kinase domain profile. 571 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00682 879 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PROTEIN-RELATED 9 879 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01160 Cme-Chr4:15872393 Cme07g00682 Cme-Chr7:5855008 0 dispersed
Cme07g00682 Cme-Chr7:5855008 Cme01g02875 Cme-Chr1:35522641 0 dispersed
Cme07g00682 Cme-Chr7:5855008 Cme04g01159 Cme-Chr4:15829451 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65007 PF12819 Malectin_like 1.00E-106 CL0202 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00682 - - csv:101209804 1608.58