Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00708 ATGGCGAAACCAAGCAGAGGCCGTCGCTCGCCGCCGTCGGGGTCAGGTTCCTCCTCACGTTCCCGCTCATTCTCCGGCTCTGATTCCCGTTCCAGTTCCCGCTCGCGCTCCAGGTCTGCATCTGTGTCCCGCTCACGCTCTCGTTCCAGGTCCATTTCTTCGTCTTCGTCTCTCTCTCGCAGCGGTAGTTCTCGGAGCAGGACACCCCCTCCTCAGAGAAAGAGTCCGACTGAAACTGCTCGGAGGTCTCGTGCTTCACCTCCACCAGCTAAACGAAGTTCTCCGCCACCCAGGAAACCATCTCCTGTACGCGAATCACTTGTTCTTCACATTGACGCACTGAGTAGGAATGTCCATGAGGGTAATTTTGGCGAAGTCGTCAATGTCGAGCTGGCAATGGATCGCACAGTAAACCTTCCTAAAGGATATGGATATGTTGAATTTAAAACGAGATCTGACGCTGAAAAAGCCCAAGCCCAAATTGATGGGAATGTTATACGAGCAAGATTTACATTACCTCAAAGACAAAAGATGCCAACACCTCCAAGGACTGTAGCAACTGTTTCAAAGAGAGATGGTCCTAAGCCTGAAAATGTTGGTCCTGATGCTGAGAAGGATGACATGAAAAGACAGAGAGAATGTATAACTCTCGATAATTATATATTATCCACTTCTCCTCGTCGAAAACTTCCTTCACCTAGAAGGCGCTCGCCTGTTGCTCGACGAGGTGGGTCTCCTAGAAGACAACCTGACTCTCCACGCCGTCGTCCGGAGTCTCCTCCACGCCGCCGTGTAGAATCTCCTTTTCGTCGCGATTCTCCTCCTCCTAGAAGGAGGCCCGCATCACCCATGAGGGGCGGCCGTTCCCCATCGCCTTTGGCAAGACGACATCGATCTCCTCCAAGGCCCTCCCCAAGAAGAATTCGTGGAAGTCCTGTTCGAAGACGTTCACCACCACCTCCTAGGCGCCGCACACCACCTCGACGTGCTCGTAGTCCTCCAAGAAGGTCTCCAGTAGTTCGTAGAAGAAGTCGTTCACCTATTAGAAGACCAGCTCGATCACGCTCCCGATCGTTTTCACCACGGAGAGGTCGGCCGGGCGCTGCCGGTAGGCGTGGGAGATCATCATCCTACTCTGCATCACCTAGTCCACGCAAGGTTCCCAGGAGGGTATCTCGCAGTCCAAGAAGGCCTTTGAGAGGAAGAAGCAGCAGCAGGAGCAGTAGCAGTAGTTCGCCTCCTCGTAAGCCATAA 1254 53.43 MAKPSRGRRSPPSGSGSSSRSRSFSGSDSRSSSRSRSRSASVSRSRSRSRSISSSSSLSRSGSSRSRTPPPQRKSPTETARRSRASPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHEGNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQAQIDGNVIRARFTLPQRQKMPTPPRTVATVSKRDGPKPENVGPDAEKDDMKRQRECITLDNYILSTSPRRKLPSPRRRSPVARRGGSPRRQPDSPRRRPESPPRRRVESPFRRDSPPPRRRPASPMRGGRSPSPLARRHRSPPRPSPRRIRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRSFSPRRGRPGAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6202616 6209077 + MELO3C026965.2.1 Cme07g00708 332724

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00708 417 Gene3D - 117 178 IPR012677 -
Cme07g00708 417 SMART rrm1_1 108 169 IPR000504 GO:0003723
Cme07g00708 417 MobiDBLite consensus disorder prediction 1 106 - -
Cme07g00708 417 MobiDBLite consensus disorder prediction 401 417 - -
Cme07g00708 417 MobiDBLite consensus disorder prediction 195 214 - -
Cme07g00708 417 MobiDBLite consensus disorder prediction 299 360 - -
Cme07g00708 417 SUPERFAMILY RNA-binding domain, RBD 74 181 IPR035979 GO:0003676
Cme07g00708 417 MobiDBLite consensus disorder prediction 247 278 - -
Cme07g00708 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 168 IPR000504 GO:0003723
Cme07g00708 417 MobiDBLite consensus disorder prediction 10 76 - -
Cme07g00708 417 PANTHER BNAA09G56240D PROTEIN 1 409 - -
Cme07g00708 417 MobiDBLite consensus disorder prediction 171 417 - -
Cme07g00708 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 173 IPR000504 GO:0003723
Cme07g00708 417 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 1 409 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00708 K14325 RNPS1; RNA-binding protein with serine-rich domain 1 - csv:101216970 251.906
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00708 Cme-Chr7:6202616 Cme04g01656 Cme-Chr4:23839738 2.19E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g998 . . . . . . . . . . Cma01g01306 Cma09g00736 Car01g01114 Car09g00646 . . Cpe02g00625 . . . . . . . Cla11g01601 Cam11g1667 Cec11g1696 . . Cmu11g1637 . . . . . Lsi04g01879 . . Cme07g00708 . . . . . . . . . Cmo01g01363 Cmo09g00728 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008093 2 1 1 1 1 0 2 0 0 1 1 0 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00708 Cme_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0