Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00767 ATGGTTCTCGTTTCGAATTCTCTGCCTTGTAAGACTCTCCCTTGCCGGACTCTGTTTCCGCCGTGCGCAACATCTTCCCGCCCCCGCCAATGGTTGCCTTCTTCACTCTCCAATGCAAGTAACCGAGTCAGAGAGCTTCGCTGCGAGTTCGAAGTGAACGTTAATGGCGCTCTTTCCGGCGACTTCGACCCTCGTTCCGTCGATAGGTTCCGTGGGGTTCTTTTCATTGGGTGGATCAATTATTTGTTGTCCCAGAAAAAAGCGTTGGAGGCAGCAATGAATGACATAAATGGCTCATTTGGGAAAGGAAGTGTTACCAGACTAGGAAGTGCTGGCGGAGCATTAGTGGAAACTTTCCCGAGTGGCTGTTTGACTTTAGACTGTGCCTTAGGTGGTGGCCTTCCTAAAGGCAGAATTGTCGAGATATTTGGACCAGAAAGTAGTGGAAAGACCACTCTAGCATTGCATGCAATTGCAGAAGTACAGAAACTAGGCGGAAATGCGATGCTTGTAGATGCAGAGCATGCCTTTGATCCAGCATATTCTAAAGCCGTAGGAGTAGATGTAGAAAATTTGATTGTCTGCCAACCTGATCATGGAGAGATGGCTCTTGAGATTGCTGATCGCATGTGTAGATCTGGTGCTGTAGATCTCATTTGTGTTGATTCTGTTTCTGCTCTTACACCAAGAGCTGAAATTGAAGGCGAGATTGGTATGCAGCAAATGGGTCTGCAGGCACGCCTCATGAGTCAAGCTTTACGCAAAATGTCTGGAAATGCGTCAAAAGCTGGTTGCACTCTCATATTTCTGAATCAAATACGATATAAGATTGGTGTGTATTATGGGAATCCAGAAGTGACAAGTGGAGGAATTGCACTAAAGTTCTTTGCCTCACTTCGACTTGAAATACGTCCTATTGGGAAGCTAAAGTCTGCTAAAGGAGATGAAGAAATTGGGATTCGAGTTCGTGTTAGAGTCCAAAAGAGCAAGGTGTCGAGGCCATACAAGCAAGCTGAGTTTGAAATTATCTTTGGAGAGGGAGTAAGTAAACTGGGTTGCATTTTAGATTGTGCTGAAATTATGGAAATTGTAGTGAAAAAGGGCTCGTGGTACAGTTACGGGGACCAGAGGTTGGGACAGGGAAGAGACAGAGCTCTGCAGTACTTAAAGGATACTCCTGCTCTTCAAGATGAAATCGAGAAGACTCTGCAGACCATGCTGACTAGTGGAACTGTTCAAATGGGATTTCAATCTATTAGAAAGCCATTGCCGAATCAAGAAGTACTCGAGGAGTTCGAATAA 1302 45.31 MVLVSNSLPCKTLPCRTLFPPCATSSRPRQWLPSSLSNASNRVRELRCEFEVNVNGALSGDFDPRSVDRFRGVLFIGWINYLLSQKKALEAAMNDINGSFGKGSVTRLGSAGGALVETFPSGCLTLDCALGGGLPKGRIVEIFGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKAVGVDVENLIVCQPDHGEMALEIADRMCRSGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASLRLEIRPIGKLKSAKGDEEIGIRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCILDCAEIMEIVVKKGSWYSYGDQRLGQGRDRALQYLKDTPALQDEIEKTLQTMLTSGTVQMGFQSIRKPLPNQEVLEEFE 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7019261 7024594 + MELO3C010554.2.1 Cme07g00767 332783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00767 433 Pfam recA bacterial DNA recombination protein 87 349 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cme07g00767 433 PANTHER MITOCHONDRIAL DNA REPAIR PROTEIN RECA HOMOLOG 84 424 - -
Cme07g00767 433 ProSitePatterns recA signature. 292 300 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Cme07g00767 433 ProSiteProfiles RecA family profile 1. 115 273 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Cme07g00767 433 SUPERFAMILY RecA protein, C-terminal domain 349 405 IPR023400 -
Cme07g00767 433 Gene3D - 114 417 IPR027417 -
Cme07g00767 433 SMART AAA_5 136 307 IPR003593 -
Cme07g00767 433 Hamap Protein RecA [recA]. 85 410 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cme07g00767 433 ProSiteProfiles RecA family profile 2. 278 353 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Cme07g00767 433 PRINTS RecA protein signature 289 317 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cme07g00767 433 PRINTS RecA protein signature 172 201 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cme07g00767 433 PRINTS RecA protein signature 324 353 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cme07g00767 433 PRINTS RecA protein signature 378 395 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cme07g00767 433 PRINTS RecA protein signature 206 235 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cme07g00767 433 PRINTS RecA protein signature 244 273 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cme07g00767 433 PANTHER RECA 84 424 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cme07g00767 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 348 IPR027417 -
Cme07g00767 433 CDD recA 86 407 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cme07g00767 433 TIGRFAM tigrfam_recA: protein RecA 85 404 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00767 K03553 recA; recombination protein RecA - csv:101216994 785.408
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01970 Cme-Chr1:28071837 Cme07g00767 Cme-Chr7:7019261 4.53E-07 dispersed
Cme05g02048 Cme-Chr5:28814341 Cme07g00767 Cme-Chr7:7019261 1.90E-99 dispersed
Cme07g00767 Cme-Chr7:7019261 Cme08g02257 Cme-Chr8:29421207 1.75E-53 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g966 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01587 Cam11g1654 Cec11g1682 Cco11g1679 Clacu11g1811 Cmu11g1625 Cre11g2041 Cone6ag0287 Cone9ag0322 . . Lsi04g01865 . . Cme07g00767 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009642 1 2 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 2 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00767 Cme_Chr07 FPKM 21.792732 23.834213 6.59765 6.667473 8.577765 8.238049 8.306851 3.273218 3.008522 3.154773