Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00769 ATGCTAATTTTAGTTGGGAATATGCAAGGAACAGGAACAATGGCGTCTGTGGCTTCCCTGTTCAATTTGGCAGGTGTTGGAGTGGTAGGATCATCAGAGAAGCCTCGTTCACAATTTCGTGGAGTTTGTTTATCGAAAAGAGGTTTTAAAGGAAGTAATAGATGGTATTATGTATCATTTCCTCTTTGTAAATATTCAGCAACAACAACAACTGATTTTGTTGCCGACCAAGGCAATGCCATCTCTGTTGATTCTAATTCTTATAGAAGAAGTAAAGAAGATGATAACACAGATTTTCTTCTCAAGCCAGCCCCAAAGCCAGTATTGAAAGCTGCAGAGTCTAAGCCCCTTGTAGGTTTGAATAAAGTAACATGGGAATCTCCGAAGACTAATGGGAATTCCAGCAGTAACAGCAAATTGTTGGATAATGAAGAGGAAAGGAGCAAGGTGATTGAGTCTCTTGGAGAGGTACTGGAAAAGGCTGAAAAGCTAGAGACTCCGAAGTTGGGTAATAGGAAACCAGGAAGAGGTGTAGATACGCCAACAACATCAAGCTCGGGCTCTAATTCGAAGCCAGTAAACTCAATGGCGAATAGAAAATATAAAACTTTAAAAAGTGTTTGGCGAAAGGGAGACACGGTTGCATCGGTGCAGAAGACTGTAGCAGAGCCATCCAAGCCTAAAGGCGAAGTTGAAGCTAAACCAAGGGGAGCTAGCAGGGTAGAGCCTCAATCACGCGCTGCTTTTCGATCCCCTCAACCACCTGTTAAACCACAACCAAAATTACAAGAAAAGCCTTTGGCTGCAACCCCACCTATATTAAAGAAACCAGTTGTCTTGAAGGATGTAGGGGCAGCAACAGTGACAGCAGATGACGAAACTAATACAGCAGCAAAGACCAAAGAGAGAAAGCCAATTCTGATTGACAAATATGCTTCAAAGAAACCTGTAGTTGATCCTTTTATTTCTGAAGCCGTATTGGCACCAACAAAACCTGCAAAAGTCCCTCCTCCTGGAAAGTTCAAGGATGATTACCGCAAGAAGAGTGTTGCATCAGGAGGTCCACGAAGGAGAATGGTTGGTGATGATAAAGATGATGTTGAAATCCCTGATGATGTTTCCATTCCTAGTGTGAGTACAGCACGAAAAGGAAGGAAATGGAGCAAGGCAAGTCGGAAGGCAGCAAGAATCCAGGCTTCCAAAGATGCTGCCCCTGTGAAAGTTGAAATTCTAGAAGTTGAAGAAAGTGGTATGTTACTTGAGGAATTGGCATATAGTTTGGCCATCAGTGAAGGTGAAATCCTTGGGTATTTATATTCTAAGGGGATTAAGCCCGATGGTGTGCAAACTTTAGATAAAGATATTGTGAAGATGATATGCAAAGAGTATGATGTGGAGACCATAGACGTTGATCCGGTTAAAGTTGAAGAGTTGGCTAAAAAGAGTGATATTTTTGATGAAGAAGATCTGGATAAACTTCAAAGCAGGCCTCCAGTCATCACCATTATGGGACATGTTGACCATGGCAAGACTACACTTTTGGACTACATCCGCAGGAGCAAGGTAGCTGCATCAGAAGCTGGTGGGATTACTCAAGGAATTGGTGCTTATAGGGTGTTGGTTCCACTTGATGGCAAGTTGCAGCCGTGTGTGTTCCTTGATACTCCAGGGCATGAGGCGTTTGGAGCCATGAGAGCTCGTGGTGCTCGGGTAACAGACATTGCCATCATTGTGGTGGCTGCTGATGATGGAATCCGGCCTCAGACAAACGAGGCTATAGCTCATGCCAAAGCAGCTGGAGTACCGATAATTGACAAAGATGGTGCTAATGCAGATAGAGTGATGCAAGAGCTTTCCTCTATTGGTTTAATGCCAGAAGACTGGGGCGGTGACATCCCTATGGTGCAGATTAGTGCTCTTAAAGGGTTGAATGTGGATGATTTATTGGAAACAGTAATGCTTCTTGCTGAGTTGCAAGAATTGAAGGCTAATCCCGATAGAAGTGCGAAAGGGACTGTCATTGAGGCAGGTCTTGACAAATCAAAAGGACCATTTGCTACATTTATTGTACAGAATGGAACCCTGAAAAGGGGAGACGTTGTAGTATGTGGAGAGGCCTTTGGGAAGGTTAGAGCTTTATTTGATGACAGCGGGAAACGAGTTGACGAAGCTGGACCTTCTTTACCAGTACAGGTCATTGGGTTAAACATTGTGCCAATTGCCGGTGATGTATTTGAGGTTGTTGATTCCCTTGATACTGCTCGTGAAAAGGCAGAGTTACGTGCTGAGGCCTTGCGGTCGCAGCGAATATCGGATAAGGCTGGAGATGGGAAGGTTACCCTTTCTTCTTTAGCTTCAGCAGTTTCATCAGGAAAGCAGTCTGGGTTAGACTTACACCAACTGAACATAATTATGAAGGTCGATGTTCAGACTACGGTGATGCATATCAAGGTTTCTGGAAATGCTTTGAAGGGATCAATTGAGGCTATTAGACAAGCCCTTCAGGTGCTCCCGCAAGAAAATGTCTCTTTGAAGTTTCTTTTACAAGCAACTGGCGATGTGAGCTCCAGTGATATTGATCTTGCAGTTGCAAGCAAAGCCATAGTTTTAGGGTTTAATGTTAAAGCATCAGGTTCAGTCAAGAGTTATGCAGAAAATAAAGGTGTCGAGATCAGGCTGTATAGAGTTATCTATGAGCTTATTGATGATGTTCGGAATGCAATGGAAGGACTCCTAGAACCTGTAGAGGAAAAAGTACCAATAGGGTCAGCAGAAGTCCGTGCAGTATTCAGTAGTGGCAGTGGTCTTGTTGCTGGATGCATGGTAGTAGAAGGAAAACTGGTAAAGGGCTGTGGCATTCGGGTTCTGCGAAAGGGTAAAACGGCATATACTGGCCAACTTGATTCACTGCGTCGGGTTAAAGAAATCGTGAAAGAGCAACACTACCCAGTTTACCCTTCAAAAATCGTAAACGCTGGCTTAGAATGTGGAGTTGGAATGGAGGACTACGATGATTGGGAGGTGGGGGATGTACTAGAGGCATTCGATACAGTTCAAAAGAAGCGGACACTAGAAGAGGCCTCGGCTTCAATGGCAACTGCGTTGGAGAAAGCTGGAATTGACTTGTAA 3129 43.98 MLILVGNMQGTGTMASVASLFNLAGVGVVGSSEKPRSQFRGVCLSKRGFKGSNRWYYVSFPLCKYSATTTTDFVADQGNAISVDSNSYRRSKEDDNTDFLLKPAPKPVLKAAESKPLVGLNKVTWESPKTNGNSSSNSKLLDNEEERSKVIESLGEVLEKAEKLETPKLGNRKPGRGVDTPTTSSSGSNSKPVNSMANRKYKTLKSVWRKGDTVASVQKTVAEPSKPKGEVEAKPRGASRVEPQSRAAFRSPQPPVKPQPKLQEKPLAATPPILKKPVVLKDVGAATVTADDETNTAAKTKERKPILIDKYASKKPVVDPFISEAVLAPTKPAKVPPPGKFKDDYRKKSVASGGPRRRMVGDDKDDVEIPDDVSIPSVSTARKGRKWSKASRKAARIQASKDAAPVKVEILEVEESGMLLEELAYSLAISEGEILGYLYSKGIKPDGVQTLDKDIVKMICKEYDVETIDVDPVKVEELAKKSDIFDEEDLDKLQSRPPVITIMGHVDHGKTTLLDYIRRSKVAASEAGGITQGIGAYRVLVPLDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIIDKDGANADRVMQELSSIGLMPEDWGGDIPMVQISALKGLNVDDLLETVMLLAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGTLKRGDVVVCGEAFGKVRALFDDSGKRVDEAGPSLPVQVIGLNIVPIAGDVFEVVDSLDTAREKAELRAEALRSQRISDKAGDGKVTLSSLASAVSSGKQSGLDLHQLNIIMKVDVQTTVMHIKVSGNALKGSIEAIRQALQVLPQENVSLKFLLQATGDVSSSDIDLAVASKAIVLGFNVKASGSVKSYAENKGVEIRLYRVIYELIDDVRNAMEGLLEPVEEKVPIGSAEVRAVFSSGSGLVAGCMVVEGKLVKGCGIRVLRKGKTAYTGQLDSLRRVKEIVKEQHYPVYPSKIVNAGLECGVGMEDYDDWEVGDVLEAFDTVQKKRTLEEASASMATALEKAGIDL 1042
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7029760 7038060 - MELO3C010552.2.1 Cme07g00769 332785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00769 1042 SUPERFAMILY Translation proteins 918 1022 IPR009000 -
Cme07g00769 1042 MobiDBLite consensus disorder prediction 124 145 - -
Cme07g00769 1042 Coils Coil 748 768 - -
Cme07g00769 1042 MobiDBLite consensus disorder prediction 177 199 - -
Cme07g00769 1042 Gene3D Translation factors 665 780 - -
Cme07g00769 1042 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 37 1032 IPR015760 -
Cme07g00769 1042 PANTHER TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC 37 1032 - -
Cme07g00769 1042 CDD mtIF2_IVc 922 1014 - -
Cme07g00769 1042 CDD IF2_eIF5B 498 658 - -
Cme07g00769 1042 Pfam Translation-initiation factor 2 808 904 IPR023115 -
Cme07g00769 1042 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 495 662 IPR000795 GO:0003924|GO:0005525
Cme07g00769 1042 MobiDBLite consensus disorder prediction 330 370 - -
Cme07g00769 1042 MobiDBLite consensus disorder prediction 124 139 - -
Cme07g00769 1042 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 823 922 IPR036925 -
Cme07g00769 1042 Pfam Translation initiation factor IF-2, N-terminal region 420 466 IPR006847 -
Cme07g00769 1042 Gene3D - 810 916 IPR036925 -
Cme07g00769 1042 MobiDBLite consensus disorder prediction 337 365 - -
Cme07g00769 1042 MobiDBLite consensus disorder prediction 217 270 - -
Cme07g00769 1042 MobiDBLite consensus disorder prediction 162 199 - -
Cme07g00769 1042 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 665 IPR027417 -
Cme07g00769 1042 TIGRFAM IF-2: translation initiation factor IF-2 419 1024 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Cme07g00769 1042 Gene3D - 492 664 IPR027417 -
Cme07g00769 1042 Gene3D Translation factors 917 1023 - -
Cme07g00769 1042 TIGRFAM small_GTP: small GTP-binding protein domain 497 652 IPR005225 GO:0005525
Cme07g00769 1042 Hamap Translation initiation factor IF-2 [infB]. 7 1022 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Cme07g00769 1042 PRINTS GTP-binding elongation factor signature 499 512 IPR000795 GO:0003924|GO:0005525
Cme07g00769 1042 PRINTS GTP-binding elongation factor signature 551 561 IPR000795 GO:0003924|GO:0005525
Cme07g00769 1042 PRINTS GTP-binding elongation factor signature 567 578 IPR000795 GO:0003924|GO:0005525
Cme07g00769 1042 CDD IF2_mtIF2_II 669 763 IPR044145 -
Cme07g00769 1042 Pfam Elongation factor Tu GTP binding domain 500 655 IPR000795 GO:0003924|GO:0005525
Cme07g00769 1042 MobiDBLite consensus disorder prediction 225 239 - -
Cme07g00769 1042 SUPERFAMILY Translation proteins 665 748 IPR009000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00769 K02519 infB, MTIF2; translation initiation factor IF-2 - csv:101216442 1839.31
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g01542 Cme07g00769 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00671 Cme-Chr1:5961747 Cme07g00769 Cme-Chr7:7029760 2.44E-22 dispersed
Cme07g00769 Cme-Chr7:7029760 Cme07g01589 Cme-Chr7:21696102 8.43E-110 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g959 . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01584 Cam11g1651 Cec11g1679 Cco11g1676 Clacu11g1808 Cmu11g1622 Cre11g2038 . . . . Lsi04g01862 . . Cme07g00769 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00885 Cme01g01542
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004219 3 2 2 2 2 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 5 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00769 Cme_Chr07 FPKM 3.779661 4.088961 4.860615 4.466034 3.339683 3.946285 2.437681 2.483947 2.370447 3.091191