Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00807 ATGAACACGAAAACCCAATATAGAATGGGTCCTTTGTATGTTCATTATTTTAAAAACCCATATGTTTGCTTTGAGGAATTAAAAAGAAAAGAAGAAGAAAAGAGAAAGAAAATGGGAAGAGGGAAAATAGAAATAAAAAGAATAGAGAACTCAAGCAATAGACAAGTTACATATTCAAAGAGAAGAAATGGTATCATCAAAAAAGCCAAAGAAATTACTGTTCTTTGTGATGCTCAAGTTTCTCTTGTCATTTTTGCTAGCTCTGGAAAAATGCATGAATATTGCAGCCCTTCTACACCTTTGGTGGATATCTTGGATAAGTATCACAAGCAATCTGGGAAGAGGCTGTGGGATGCTAAGCATGAGAATCTGAGCAATGAAATGGATAGAGTTAAGAAAGAAAATGACAACATGCAGATTGAGCTAAGGCATTTGAGAGGTGAAGATATAACATCTTTGAACTACAAGGAGTTAATGTCTCTTGAAGAAGCTCTTGAAAATGGCCTCACCGGTGTTCGTGAGAAGCAGTCGGAATTCATGAAAATGATGAGAACAAATGAGAGAATGATGGAAGAAGAGAACAAGCGCCTCAACTATGAGCTGTACCAAAAGGAGATGGTTGCAATGGGAGATAGTGTGAGAGAAATGGATATTGGATATAATCAAAGAATGAGAGATTTCAATTCTCAAATGCCTTTTGCTTTCAGAGTTCAGCCTATTCAGCCAAATCCACAAGAAAGGGAATAA 747 36.41 MNTKTQYRMGPLYVHYFKNPYVCFEELKRKEEEKRKKMGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFASSGKMHEYCSPSTPLVDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRHLRGEDITSLNYKELMSLEEALENGLTGVREKQSEFMKMMRTNERMMEEENKRLNYELYQKEMVAMGDSVREMDIGYNQRMRDFNSQMPFAFRVQPIQPNPQERE 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7608414 7612997 - MELO3C010515.2.1 Cme07g00807 332823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00807 248 ProSiteProfiles K-box domain profile. 121 207 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme07g00807 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 47 94 IPR002100 GO:0003677|GO:0046983
Cme07g00807 248 ProSitePatterns MADS-box domain signature. 40 94 IPR002100 GO:0003677|GO:0046983
Cme07g00807 248 ProSiteProfiles MADS-box domain profile. 38 98 IPR002100 GO:0003677|GO:0046983
Cme07g00807 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 38 247 - -
Cme07g00807 248 SUPERFAMILY SRF-like 39 133 IPR036879 GO:0003677|GO:0046983
Cme07g00807 248 SMART madsneu2 38 97 IPR002100 GO:0003677|GO:0046983
Cme07g00807 248 Pfam K-box region 119 200 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme07g00807 248 Gene3D - 50 137 IPR036879 GO:0003677|GO:0046983
Cme07g00807 248 Coils Coil 114 148 - -
Cme07g00807 248 PRINTS MADS domain signature 40 60 IPR002100 GO:0003677|GO:0046983
Cme07g00807 248 PRINTS MADS domain signature 60 75 IPR002100 GO:0003677|GO:0046983
Cme07g00807 248 PRINTS MADS domain signature 75 96 IPR002100 GO:0003677|GO:0046983
Cme07g00807 248 PANTHER FLORAL HOMEOTIC PROTEIN PISTILLATA 38 247 - -
Cme07g00807 248 CDD MADS_MEF2_like 39 117 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00496 Cme-Chr4:3972168 Cme07g00807 Cme-Chr7:7608414 2.05E-42 dispersed
Cme07g00807 Cme-Chr7:7608414 Cme08g00026 Cme-Chr8:211301 1.83E-36 dispersed
Cme07g00807 Cme-Chr7:7608414 Cme07g01021 Cme-Chr7:11591766 5.07E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41632 PF01486 K-box 1.50E-18 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00807 K09264 - csv:101222239 409.453