Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00814 ATGTCTACAAGCTACAACTTCATATCACAAAACCCTTCCCGCCATTCACACTCTCACTCTTTCATCCGTCCAATTTCTCACAAGATCCTCTCTCTCGCCGGAGTTCGATCGAGAAAGAAAGTAATCGAAGCAACTACCGAAATGCTGAAGCCGAAGCCATTCGCCGGAGCTAATGTGTTCGTCTCCCGTAATCTCGTCGCTCCGGAGATGTTCGATGCTCTTCACGACGCTCTCAAGCAGAATGGGGCCGAGGTTTTCCTCTGTTGCGATCCCTCTCGAAACGGCCCTAACGATTATCATGTTATCTCCTCCGCCGATCACGAAAAGTTCGAGGATCTTCGCGCCAAGGGATGCAACTTGTTAGGTATGTTAATATTTGTCAGTGCATGCTGCATGTACGCAGTAGCCAATCCGACGCCTGGGACTTGGTGCGTCGCTGACAACTTGAATTTCTGTTGGGAAGGTCCTCAGTGCGTGATGTCATGTGCAAAAGAGCACAGACCCCTTCCTCAACAGGGTTATACTTGCTGCCTTGCCATGGATGGTGTGAAAATTTTGGCATCCGGTTTTCAGGAAGATGAAAAGTGGGCACTAAACATTTCAAAGAAACCCATCGTGTCGTTTTCTTGGTTACAACAATGCTGGATTGAGCATCGTGTTGTGCCTCAGGAGGGATATCGGGTCCTTCCATTTTCTGGATTGAATATTTCGGTATCGAGAATTCCTGCAGCTCCTGAAGGTGACAAGTACAAAGTTGCACGAACATGGGGCCGTATCAATATTGTTACTCGGAAATGGTTTGATCAGTCCATAGCCAGAAAAGCATGTCTGAGTGAGGAGTTGTACCCTGTTGGTGGCGTTTCTGGAACTTCAAATAAATTGACAAGGAGTTGCTTGACTGCTCACAATAGCCAAGAAAAGGTTACTGGGAACTTGCAAGCTGCACCGTCCTCATTTTTTGCCGATTCAAGTTTCACAGCAGTTTCTGGTCCTGGGTTTTCAGACATGGATGTTGAAGCTACTCTTTCACAGAGCACGTCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTGCCAGTAGCGACAGGAAGGAACGAAGAAAACACTGTTAATTGTCTTGCAAATGACTTTCAGTCTGAAGAAAATGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCGGAAGATTGTAAATATGATTCTCAGAGGTGGAGGCTCCCGATACATGTTGTTCAATGACAAATTAACACACATAATAGTTGGAAATCTGTCGGAAATGGAGAAAAAGGAGGTTAGAGATATTGCCGCTTCAGGAGTCGTTCATGTGGTTAGAACCAACTGGCTTGAAGATTGTGATCGTCAGAAAAAGGAGATCCCTATTCTTGGTAGACACATGGCATATGATGAACTTATTCCTAAAGCATCCAGTAAAATGAGCACCATTGTTATCGATCGGAGTAAAGTTCCAAATGTTCATCCAATCGTGCCATCAATTGTGCCAGAAGGAAATATTCATGTTAGCACTGGAAAGACGTCAATGACAGTTGAAAGAATTGAAGAAAAAAGTGAAACAAAAGTGAACGGAGACAGGAAAATGAAATTATCCCAGAAAAGCCAACAATGTGTACCAAATGGTACAAACAAGAGTCAAGAAAAGATGGCGCGTGATTTCATGGTTTCAAATGGGAAGTCATCATGTGTGTTTAAGGGAAAAATATTTTGTTTTTCTAGTTCCTTTCCAGAAGATCGGAGAGCTGAAATTGTTGAATGGATAAATCAAGGGGGAGGGGAGGTCGTTGAAGATCACATGAAGCAGAAAGTGCACTTCACTGTTGAATGTCATGGTGGGATACCAAGGAGTACAGACGTTCATAGTACTTATGTGTCAAGTCATTGGGTTCGATCATGTTTAGAGGATGGATGCTTGTGGGCTACCAATGGGCACATTCTCTATTCTCCTCTTCCTTGCTGTGTCCCTTTGTCTGGATTTGAAAACATACGGTTCTGTGTTTCACAATATGACGATAAAGACAGGGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGCTGACAAAGAAGGTAACCCATCTAATATGCAAGTTCACCGATGGGACAAAGTATGAGGCTGCTTGTAAATGGGGAATACAATGCATTACAGCTGAATGGATATATGAATGTGTCAGACAGAGCAAGATTGTTTCTCTTGATTTGTATCGCCCAAAAGAAGTTACAGCTCAAGACAGAGCAGCAGGCTTATGCACTGTCAGCCAATTTCCTACTCAAGCTGCCCCAATGATAGCTAATGAAAGCATATCCCAGTTCCCTATCCATTCCACCATTCCGAGAGACCAATCAGCTGGAACTAATAATAGCTCTATAGAAGCAGTTGAACAAATAAGTTCTACTAAAAAAAAGCGCAAGTTATTTGACGAAGCCATACAAAAGCGTCCACTTTTCCTTGGAAACAGTTCTACTCAATCTGACTGCAATTTGAATTCCACAAAACAAACTACATCAAAGTCTTCTGTAGTAACTACGCATGTTCCTGATGTCGCTTCCGCAATTGAGGACTTGTTGGAGCAGACAACTAAGATTCAAGATCAGAAGTCACCTGGAAAGACTGGCTGCGACAAAAGTATTTTCCCGCCCGACTGTTCACTTGTTGGTCAAGACCATTCAGAAACTTCTCAAATTGGTGGTATATCTAACCAGTGGTCGAAAAGAGCTGAAAGAAAAGAAGATGTCAGCAATTCTACTGCTGAAGATGGGACTGTGGGCATATATGATGGCTTTAGTGAAACACAAACGGAGTCTCAGGTGTGTGATCTTTTTCTTTTTGTCAACTATAACTATATCAATTATAGTAAGTTTTTTTTAAATTGCCACCCTTTTTGTCAACTTGATTTCAAGAGGACTAAAGAACGAACTACAACTCATAAGATCTTTTATGGAGTAGGAATCGGGATACTATGGTCAAATTCTTAA 3042 42.18 MSTSYNFISQNPSRHSHSHSFIRPISHKILSLAGVRSRKKVIEATTEMLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADHEKFEDLRAKGCNLLGMLIFVSACCMYAVANPTPGTWCVADNLNFCWEGPQCVMSCAKEHRPLPQQGYTCCLAMDGVKILASGFQEDEKWALNISKKPIVSFSWLQQCWIEHRVVPQEGYRVLPFSGLNISVSRIPAAPEGDKYKVARTWGRINIVTRKWFDQSIARKACLSEELYPVGGVSGTSNKLTRSCLTAHNSQEKVTGNLQAAPSSFFADSSFTAVSGPGFSDMDVEATLSQSTSMFSDASHFINEVDVEVPVATGRNEENTVNCLANDFQSEENDLYLSACRIKVVGFEASEMRKIVNMILRGGGSRYMLFNDKLTHIIVGNLSEMEKKEVRDIAASGVVHVVRTNWLEDCDRQKKEIPILGRHMAYDELIPKASSKMSTIVIDRSKVPNVHPIVPSIVPEGNIHVSTGKTSMTVERIEEKSETKVNGDRKMKLSQKSQQCVPNGTNKSQEKMARDFMVSNGKSSCVFKGKIFCFSSSFPEDRRAEIVEWINQGGGEVVEDHMKQKVHFTVECHGGIPRSTDVHSTYVSSHWVRSCLEDGCLWATNGHILYSPLPCCVPLSGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGIQCITAEWIYECVRQSKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANESISQFPIHSTIPRDQSAGTNNSSIEAVEQISSTKKKRKLFDEAIQKRPLFLGNSSTQSDCNLNSTKQTTSKSSVVTTHVPDVASAIEDLLEQTTKIQDQKSPGKTGCDKSIFPPDCSLVGQDHSETSQIGGISNQWSKRAERKEDVSNSTAEDGTVGIYDGFSETQTESQVCDLFLFVNYNYINYSKFFLNCHPFCQLDFKRTKERTTTHKIFYGVGIGILWSNS 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7720721 7729614 + MELO3C010511.2.1 Cme07g00814 332830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00814 1013 ProSiteProfiles BRCT domain profile. 204 228 IPR001357 -
Cme07g00814 1013 MobiDBLite consensus disorder prediction 843 863 - -
Cme07g00814 1013 Gene3D BRCT domain 573 669 IPR036420 -
Cme07g00814 1013 SUPERFAMILY BRCT domain 244 285 IPR036420 -
Cme07g00814 1013 Gene3D BRCT domain 370 474 IPR036420 -
Cme07g00814 1013 SUPERFAMILY BRCT domain 641 760 IPR036420 -
Cme07g00814 1013 SUPERFAMILY BRCT domain 389 472 IPR036420 -
Cme07g00814 1013 Pfam twin BRCT domain 680 741 IPR001357 -
Cme07g00814 1013 ProSiteProfiles BRCT domain profile. 576 663 IPR001357 -
Cme07g00814 1013 Gene3D BRCT domain 673 766 IPR036420 -
Cme07g00814 1013 MobiDBLite consensus disorder prediction 546 563 - -
Cme07g00814 1013 ProSiteProfiles BRCT domain profile. 386 478 IPR001357 -
Cme07g00814 1013 Gene3D BRCT domain 234 286 IPR036420 -
Cme07g00814 1013 SMART BRCT_7 673 749 IPR001357 -
Cme07g00814 1013 SMART BRCT_7 388 468 IPR001357 -
Cme07g00814 1013 SMART BRCT_7 578 653 IPR001357 -
Cme07g00814 1013 ProSiteProfiles BRCT domain profile. 676 759 IPR001357 -
Cme07g00814 1013 SUPERFAMILY BRCT domain 50 228 IPR036420 -
Cme07g00814 1013 MobiDBLite consensus disorder prediction 538 563 - -
Cme07g00814 1013 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 54 974 - -
Cme07g00814 1013 SUPERFAMILY BRCT domain 580 665 IPR036420 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00814 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1 - csv:101210305 1615.9
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g215 . . . . . . . . . . . Cma09g00770 . . . Cpe06g00607 . . . . . . . . . . . . . . . . Cone7ag1503 . . Lsi04g02416 Csa04g01777 . . . . . . . . . . . . Cmo09g00762 . . . Car09g00680 . Cpe02g00570 Bhi09g02711 . . . . Mch11g0853 . Cla11g01556 Cam11g1620 Cec11g1647 Cco11g1648 Clacu11g1777 Cmu11g1593 Cre11g2011 . . Chy07g00604 Cme07g00814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003479 1 4 1 1 1 0 2 1 0 4 1 1 1 1 1 2 1 1 2 1 7 1 1 1 2 1 1 1 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00814 Cme_Chr07 FPKM 4.901259 6.019098 6.131137 7.808154 7.270382 5.66968 7.082208 15.554483 13.455721 14.332917