Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme07g00817 | ATGCTGTTCTATGGACCGCCTGGTACTGGAAAAACCACCACTGCTCTTGCGATTTCCCATCAATTATTCGGTCCTGAACTTTACAAGTCTAGAGTTTTGGAGTTGAATGCAAGTGATGACCGCGGGATCAATGTTGTTCGGACTAAGATTAAAGATTTTGCTGGTGTTGCAGTAAGCAGTGGCCAACGCCAAGGGGGTTATCCTTGTCCACCCTTCAAGATAATCATTTTGGATGAGGCTGATTCAATGACTGAAGATGCTCAGAATGCCTTGAGGCGTACCATGGAAACACACTCCAAAGTGACACGATTCTTTTTTATTTGCAACTATATCAGCAGGATTATAGAGCCCCTTGCATCTAGGTGTGCAAAGTTTAGGTTTAAGCCACTTTCTGAAGAGGTTATGAGTAAGCGTATATTGCACATCAGCAATGAAGAAGGTCTTAGTCTAGACGGAGAGGCTCTTTCAACCTTAAGTTCAATGTCTCAAGGTGACCTCCGTCGAGCTATCACATATTTACAGTCAGCTGCACGCTTATTTGGATCATCAATCTCTTCAAAGGATTTGGTTAACGTGTCTGGGATTATCCCTCGGGAGGTTGTTGATGCACTTTTTACTGCTTGTAAAAGTGGTAACTTCGATACTGCAAACAAGGAAGTCAACAATGTACTTGCAGAAGGATATCCAGTGGCTCAAATGCTTTCACAGATATTTGAAGTGGTGATTGAAGACAATGATTTGCAAGATGAGCAGAAGGCCAGGATATGCAAGAAGTTGGCCGAAGCTGACAAGTGTCTCGTTGATGGTGCGGATGAATATTTGCAACTGCTCGATGTGGTAAGTCAAACAATGCAAGCTTTAAGAAGTATGCAACTGTAG | 879 | 42.89 | MLFYGPPGTGKTTTALAISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHISNEEGLSLDGEALSTLSSMSQGDLRRAITYLQSAARLFGSSISSKDLVNVSGIIPREVVDALFTACKSGNFDTANKEVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARICKKLAEADKCLVDGADEYLQLLDVVSQTMQALRSMQL | 292 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 7770374 | 7776011 | - | MELO3C010507.2.1 | Cme07g00817 | 332833 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme07g00817 | 292 | Gene3D | - | 196 | 286 | - | - | |
| Cme07g00817 | 292 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 196 | 282 | IPR008921 | GO:0003677|GO:0006260 | |
| Cme07g00817 | 292 | PANTHER | REPLICATION FACTOR C SUBUNIT 4 | 1 | 286 | - | - | |
| Cme07g00817 | 292 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 177 | IPR027417 | - | |
| Cme07g00817 | 292 | CDD | HLD_clamp_RFC | 130 | 192 | - | - | |
| Cme07g00817 | 292 | CDD | AAA | 1 | 122 | - | - | |
| Cme07g00817 | 292 | Pfam | Replication factor C C-terminal domain | 197 | 282 | IPR013748 | - | |
| Cme07g00817 | 292 | Gene3D | - | 1 | 129 | IPR027417 | - | |
| Cme07g00817 | 292 | Pfam | ATPase family associated with various cellular activities (AAA) | 1 | 128 | IPR003959 | GO:0005524|GO:0016887 | |
| Cme07g00817 | 292 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 1 | 286 | - | - | |
| Cme07g00817 | 292 | SMART | AAA_5 | 1 | 130 | IPR003593 | - | |
| Cme07g00817 | 292 | Gene3D | - | 132 | 195 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme06g02668 | Cme-Chr6:33778714 | Cme07g00817 | Cme-Chr7:7770374 | 4.35E-53 | dispersed | |
| Cme07g00817 | Cme-Chr7:7770374 | Cme08g01938 | Cme-Chr8:23951545 | 3.90E-22 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme07g00817 | K10755 | - | csv:101221224 | 557.37 |