Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00817 ATGCTGTTCTATGGACCGCCTGGTACTGGAAAAACCACCACTGCTCTTGCGATTTCCCATCAATTATTCGGTCCTGAACTTTACAAGTCTAGAGTTTTGGAGTTGAATGCAAGTGATGACCGCGGGATCAATGTTGTTCGGACTAAGATTAAAGATTTTGCTGGTGTTGCAGTAAGCAGTGGCCAACGCCAAGGGGGTTATCCTTGTCCACCCTTCAAGATAATCATTTTGGATGAGGCTGATTCAATGACTGAAGATGCTCAGAATGCCTTGAGGCGTACCATGGAAACACACTCCAAAGTGACACGATTCTTTTTTATTTGCAACTATATCAGCAGGATTATAGAGCCCCTTGCATCTAGGTGTGCAAAGTTTAGGTTTAAGCCACTTTCTGAAGAGGTTATGAGTAAGCGTATATTGCACATCAGCAATGAAGAAGGTCTTAGTCTAGACGGAGAGGCTCTTTCAACCTTAAGTTCAATGTCTCAAGGTGACCTCCGTCGAGCTATCACATATTTACAGTCAGCTGCACGCTTATTTGGATCATCAATCTCTTCAAAGGATTTGGTTAACGTGTCTGGGATTATCCCTCGGGAGGTTGTTGATGCACTTTTTACTGCTTGTAAAAGTGGTAACTTCGATACTGCAAACAAGGAAGTCAACAATGTACTTGCAGAAGGATATCCAGTGGCTCAAATGCTTTCACAGATATTTGAAGTGGTGATTGAAGACAATGATTTGCAAGATGAGCAGAAGGCCAGGATATGCAAGAAGTTGGCCGAAGCTGACAAGTGTCTCGTTGATGGTGCGGATGAATATTTGCAACTGCTCGATGTGGTAAGTCAAACAATGCAAGCTTTAAGAAGTATGCAACTGTAG 879 42.89 MLFYGPPGTGKTTTALAISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHISNEEGLSLDGEALSTLSSMSQGDLRRAITYLQSAARLFGSSISSKDLVNVSGIIPREVVDALFTACKSGNFDTANKEVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARICKKLAEADKCLVDGADEYLQLLDVVSQTMQALRSMQL 292
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 7770374 7776011 - MELO3C010507.2.1 Cme07g00817 332833
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00817 292 Gene3D - 196 286 - -
Cme07g00817 292 SUPERFAMILY post-AAA+ oligomerization domain-like 196 282 IPR008921 GO:0003677|GO:0006260
Cme07g00817 292 PANTHER REPLICATION FACTOR C SUBUNIT 4 1 286 - -
Cme07g00817 292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 177 IPR027417 -
Cme07g00817 292 CDD HLD_clamp_RFC 130 192 - -
Cme07g00817 292 CDD AAA 1 122 - -
Cme07g00817 292 Pfam Replication factor C C-terminal domain 197 282 IPR013748 -
Cme07g00817 292 Gene3D - 1 129 IPR027417 -
Cme07g00817 292 Pfam ATPase family associated with various cellular activities (AAA) 1 128 IPR003959 GO:0005524|GO:0016887
Cme07g00817 292 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 1 286 - -
Cme07g00817 292 SMART AAA_5 1 130 IPR003593 -
Cme07g00817 292 Gene3D - 132 195 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02668 Cme-Chr6:33778714 Cme07g00817 Cme-Chr7:7770374 4.35E-53 dispersed
Cme07g00817 Cme-Chr7:7770374 Cme08g01938 Cme-Chr8:23951545 3.90E-22 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00817 K10755 - csv:101221224 557.37