Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00835 GGTTATTTCGTCCTTTATATAATCTCCCATCGGTGGAATTCAGCGACAACCAAAACTGCCCATTATTTTCTCTGTATTTATTTTATCTCTTTATCGGCAAAGGCGATGGCGGAAAGAACGGTGTTCGACGGAGAAGCGGCGGAGAGAGTGGTGACGGAGCTGAGAGAGAGCTATAATTCCGGCAAAACTCGAAGCTATGAATGGAGAGAGAATCAACTGAAGAATATGTTGAAACTGGTTTGTGAAAACGAAGATGTGATGGTGCAAACGGTCAATTCCGATCTTCATAAACCCGAATTCGAAGCCTTTGCTCATGAGATAGCTCTATTAAAAGGTTCGTGTAAATTGGCACTTAAAGAACTCAGGCGTTGGATGGCTCCAGAAAAGGTTAAATCTTCAATTACCGTATTTCCTTCGTCTGCTGCAATTGTACCAGAGCCTTTTGGTGTTGTCCTAATCATTTCAGCTTGGAATTATCCATTCTTGTTATCTCTCGATCCTGTTGTTGGAGCAATAGCAGCTGGTAATGCTGTGGTTCTGAAGCCATCAGAAATTTCCCCAAGAACATCATCTCTGATGGCAAAACTTTTAGAGAAATATTTGGATACTTCTGCTGTAAAAGTTGTTGAGGGTGCTGTTCCCGAAACTAATGCTTTGCTGGAGCAAAAGTGGGACAAAATATTTTACACAGGCAATGGAAGAGTGGGGCGCATAGTGATGGCAGCTGCTGCCAAGCATCTTACGCCAGTTGTATTAGAGCTTGGAGGAAAATCTCCCGTAGTAGTAGATTCAGATATCAATTTACAGGTTGCGAGTAGGCGGATTATAGCTGGCAAGTGGGGTTGTAACAATGGACAAGCATGCATTGCTCCAGATTATATCATAACTACCAAAGAATTTGCTCCAAAATTGGTGGAGTGTATGAGACAAGAACTGGAGAATTTTTACGGAAAGAATCCCTTGGAAACTAAAGATTTATCTCGCATTGTGAATGCTAACCACTTTGATCGCTTGACAAGGCTCTTAGATGATGATAAAATTTCTGGCAAGATTGTGCATGGAGGCGAAAAGGACAAATCCAAGCTGCAGATAGCTCCCACCCTCTTATTGGATGTTCCTCGAGACTCACTAATCATGACGGAGGAGATATTTGGTCCCTTACTTCCTATTCTCACGGTCGACAAAGTGGAGGACAGCTTTGACATAGTGAACTCGGGCACAAAGCCACTTGCAGCATATTTATTTACCAACAACAAGAAGCTCAAGGAACGATTCGTGGCTTGTATCTCTGCAGGGGGCGTGGCCATTAATGAGACCGCCCTACATCTGACGATTAGCACACTACCGTTCGGAGGAGTTGGGGAGAGCGGAATGGGAGCTTACCATGGGAAATTCTCCTTTGATGCATTTAGCCATAAGAAGGCTGTTCTTTATCGAAGTTTCGCAGGGGATGCACCGATGAGATACCCGCCATACACGAAGGGAAAGCTGAGAATTCTCAAGGCTCTTCTTGGAGGTGGCATATTGGGACTCATTCGTGCTTTACTTGGTTGGTCATAA 1560 43.85 GYFVLYIISHRWNSATTKTAHYFLCIYFISLSAKAMAERTVFDGEAAERVVTELRESYNSGKTRSYEWRENQLKNMLKLVCENEDVMVQTVNSDLHKPEFEAFAHEIALLKGSCKLALKELRRWMAPEKVKSSITVFPSSAAIVPEPFGVVLIISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEISPRTSSLMAKLLEKYLDTSAVKVVEGAVPETNALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSDINLQVASRRIIAGKWGCNNGQACIAPDYIITTKEFAPKLVECMRQELENFYGKNPLETKDLSRIVNANHFDRLTRLLDDDKISGKIVHGGEKDKSKLQIAPTLLLDVPRDSLIMTEEIFGPLLPILTVDKVEDSFDIVNSGTKPLAAYLFTNNKKLKERFVACISAGGVAINETALHLTISTLPFGGVGESGMGAYHGKFSFDAFSHKKAVLYRSFAGDAPMRYPPYTKGKLRILKALLGGGILGLIRALLGWS 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8057448 8063688 - MELO3C010493.2.1 Cme07g00835 332851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00835 519 Pfam Aldehyde dehydrogenase family 36 476 IPR015590 GO:0016491
Cme07g00835 519 PIRSF ALDH 30 509 IPR012394 GO:0006081
Cme07g00835 519 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 55 474 IPR016162 GO:0016491
Cme07g00835 519 SUPERFAMILY ALDH-like 48 492 IPR016161 GO:0016491
Cme07g00835 519 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 252 259 IPR029510 GO:0016491
Cme07g00835 519 PANTHER ALDEHYDE DEHYDROGENASE 35 519 - -
Cme07g00835 519 CDD ALDH_F3FHI 47 478 - -
Cme07g00835 519 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 256 456 IPR016163 GO:0016620
Cme07g00835 519 PANTHER ALDEHYDE DEHYDROGENASE 35 519 IPR012394 GO:0006081
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00835 K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] - csv:101219329 904.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00835 Cme-Chr7:8057448 Cme07g01699 Cme-Chr7:22544320 1.97E-151 dispersed
Cme07g00834 Cme-Chr7:8049201 Cme07g00835 Cme-Chr7:8057448 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g247 . Blo12g01125 . Bda03g00014 . Bpe04g00009 Bma04g00013 . . . Cma01g01383 Cma09g00785 . . . Cpe06g00619 . . . . . . . . . . . . . . . Cone4ag1417 Cone7ag1521 . . Lsi04g02401 Csa04g01789 . . . . . . . . . . . Cmo01g01433 Cmo09g00776 . . . Car09g00694 . Cpe02g00556 Bhi09g02693 . . . Hepe01g2295 Mch11g0839 . Cla11g01542 Cam11g1605 Cec11g1633 Cco11g1636 Clacu11g1762 Cmu11g1578 Cre11g1996 . . Chy07g00628 Cme07g00835
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme02g01337 . 70 566 Aldehyde Dehydrogenase Gene Family AT3G24503 70.9 1.1e-210 729.6
Cme02g01959 . 49 554 Aldehyde Dehydrogenase Gene Family AT3G24503 53.3 8.7e-155 543.9
Cme05g01785 . 53 334 Aldehyde Dehydrogenase Gene Family AT3G24503 56.9 5.8e-90 328.6
Cme02g01959 . 4 554 Aldehyde Dehydrogenase Gene Family AT3G48000 78.0 5.5e-256 880.2
Cme02g01337 . 82 566 Aldehyde Dehydrogenase Gene Family AT3G48000 55.1 1.1e-160 563.5
Cme05g01785 . 1 334 Aldehyde Dehydrogenase Gene Family AT3G48000 77.6 4.1e-150 528.5
Cme02g01959 . 46 403 Aldehyde Dehydrogenase Gene Family AT1G23800 76.3 2.0e-165 578.9
Cme05g01785 . 1 334 Aldehyde Dehydrogenase Gene Family AT1G23800 77.9 1.7e-148 522.7
Cme02g01337 . 82 410 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 1.6e-101 366.7
Cme07g00835 . 23 519 Aldehyde Dehydrogenase Gene Family AT4G34240 62.0 4.0e-182 634.8
Cme07g00834 . 7 431 Aldehyde Dehydrogenase Gene Family AT4G34240 54.6 2.8e-143 505.8
Cme07g00835 . 107 517 Aldehyde Dehydrogenase Gene Family AT1G44170 72.5 2.5e-179 625.2
Cme07g00834 . 80 429 Aldehyde Dehydrogenase Gene Family AT1G44170 72.0 2.1e-149 525.8
Cme05g00154 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 51.5 2.3e-116 416.0
Cme07g01699 . 1 464 Aldehyde Dehydrogenase Gene Family AT4G36250 61.4 3.0e-176 615.1
Cme05g00154 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.8 1.3e-158 556.6
Cme11g01643 . 37 540 Aldehyde Dehydrogenase Gene Family AT1G79440 76.6 1.4e-232 802.4
Cme01g00184 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.3 1.2e-238 822.8
Cme08g00717 . 196 641 Aldehyde Dehydrogenase Gene Family AT2G14170 59.3 1.4e-159 560.1
Cme02g01936 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 80.8 3.2e-250 860.9
Cme02g01936 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.1 3.1e-253 870.9
Cme05g01834 . 79 537 Aldehyde Dehydrogenase Gene Family AT2G24270 91.1 6.7e-248 853.2
Cme12g01755 . 21 492 Aldehyde Dehydrogenase Gene Family AT5G62530 76.8 1.4e-222 769.2
Cme11g02077 . 1 588 Aldehyde Dehydrogenase Gene Family AT3G66658 75.3 2.8e-269 924.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002493 2 3 2 2 2 0 3 2 0 2 1 2 3 2 2 3 2 3 3 2 1 1 1 1 1 2 1 3 2 2 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00835 Cme_Chr07 FPKM 0.850218 1.218619 1.219721 0.997569 3.510128 4.176271 4.00324 1.256799 1.494361 1.249368