Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00865 ATGGGCCGCAACGAGAAGCCCAAATCAGGGACTGCGTCATGGATTCTTACCAATCTGGGGGCCCTTCACAACACGGGAATCGATTCTCTTGGATTTCCTTGGGCGTTCCATCTTGGTCTAAACCTTCGTCCTACTCTGTACTCTCCTCTCTCCGGCGCGCTTCTTTGCTCTGAATTCCAGCTCTCCGCTTCAGTATGGCGAAGGAGGTCTATACCAGGGAAGACTTACTTGAGCTGTTGCAGGTACGAACATCCTGCTGTATTGACAGTTGAAGCTCAGAACATGCATTCTATGTTGCAATGTATGTTTTTAACACCTGTGATACTTTCCGCTAATATGCAGGACAAAAAGAATAGATACTACATTGTTTCTGCATTGGCAGACACCAAAGTGGATCTAAAAGTTCTATCTGTGAGACTTGGTTTGGGTAAAGGTGGTCTGAGAATGGCTCCCGAGGAAGCATTGGGTGAGAAACTTAAGTTATTATGTGCCACTGTAACCCTTTCCTCGTGCAGGGATGTCGCCTTGTTGTTGGACCAGGGATTTAAAGGCCAGGAATTTTGCTTCTTTCATCCTTTGTCAAACGAAACATCAATATCCATTAATACCAGTAATCTTGACAAGTTCCTTCAATCGATTGGGAGAGACCCTTCATATGTTGACTTGGAGGCTAATCCTTCTGTAGGAAAGGATCAACCCCCAGATCTTGCCGGACTTGTTCCATCTGGTTCTGCCCTTCTGCCTGATACTCCAGAGAAAGTATCTTCTCGCCCAGATTCTAATGAAAATCATGGTGTTACCGACAAGAAGTCTAAAGCAGTTGCAGTGAACACAGTCAAACCATCTACCACTGTGAAAGTTGGAAAGGACAAACCTACACCCAATGGTCGACCAACCTATGCAAATGTGGAAAAATTTGTGGAAGAGATCCTTGATAAGACGTCGGCAATAGTGCTCTCAGAGCTGACAGAGGAGACAGTTAATAAACATGGAGAGCATCTGGGAGCCGTGGTGTCAAACAGCATTAAGAGACATCTCAGCTCGGAATTGAACAATCTTTCTATGATATTTAAGAACGTTGCATACACAGAAGGGTTTCATGCTGGGTCTTCCCATAAAAGAAGAGAACTTGGACAGAAGGCGGATAGTATAAATTGGGTAGAAATGACAGCATCCTGCCAGTGTAATGGGCATGGGTTTCAGAGAGATGTTTTAGTGTCTTCGTACATGCACACACGTATTTACATTTCTAGCGAAGAGTTTCAAAATAATGGGGTGAAGGGGAATGGCTTGAAAAGGAAAATAATTTTAGGCATGATTTTATCTCCCATTAGAAGCATAGAGAAAGTAAAATCATCAGCAGTAGATCCCTAG 1374 43.81 MGRNEKPKSGTASWILTNLGALHNTGIDSLGFPWAFHLGLNLRPTLYSPLSGALLCSEFQLSASVWRRRSIPGKTYLSCCRYEHPAVLTVEAQNMHSMLQCMFLTPVILSANMQDKKNRYYIVSALADTKVDLKVLSVRLGLGKGGLRMAPEEALGEKLKLLCATVTLSSCRDVALLLDQGFKGQEFCFFHPLSNETSISINTSNLDKFLQSIGRDPSYVDLEANPSVGKDQPPDLAGLVPSGSALLPDTPEKVSSRPDSNENHGVTDKKSKAVAVNTVKPSTTVKVGKDKPTPNGRPTYANVEKFVEEILDKTSAIVLSELTEETVNKHGEHLGAVVSNSIKRHLSSELNNLSMIFKNVAYTEGFHAGSSHKRRELGQKADSINWVEMTASCQCNGHGFQRDVLVSSYMHTRIYISSEEFQNNGVKGNGLKRKIILGMILSPIRSIEKVKSSAVDP 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8643562 8648563 + MELO3C032634.2.1 Cme07g00865 332881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00865 457 Pfam Aminoacyl-tRNA editing domain 113 209 IPR007214 GO:0002161
Cme07g00865 457 PANTHER YBAK DOMAIN-CONTAINING PROTEIN 80 373 IPR040285 -
Cme07g00865 457 SUPERFAMILY YbaK/ProRS associated domain 82 222 IPR036754 GO:0002161
Cme07g00865 457 PANTHER PROLYL-TRNA SYNTHETASE ASSOCIATED DOMAIN-CONTAINING PROTEIN 1-RELATED 80 373 - -
Cme07g00865 457 MobiDBLite consensus disorder prediction 221 272 - -
Cme07g00865 457 MobiDBLite consensus disorder prediction 255 269 - -
Cme07g00865 457 Gene3D - 77 229 IPR036754 GO:0002161
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00865 - - K08176 csv:101217512 474.937
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g290 . . . . Bpe02g00075 . . Bma01g02643 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1391 Cone7ag1545 . . Lsi04g02381 Csa04g01811 . . . . Bda11g00743 . . . . . . . . . . . . . . Bhi09g02662 . . . Hepe01g2274 Mch11g0821 . . . . . . . . . . Chy07g00658 Cme07g00865
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006927 1 1 1 1 1 0 2 1 0 1 1 2 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00865 Cme_Chr07 FPKM 39.934414 46.232048 14.594092 14.920292 21.025173 19.470669 20.247652 18.06958 23.059649 19.111515