Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00892 ATGGCTACCTCAATCCACAATCCCCAATTCTCTCATTTAGATTCTTTCTCTAACCTCCGCTCTGATTCCTCACTTCGTTGTTGCAATGTCCCTTCCATTCCTAACAATCATCTCCAAATCAACAACCACGACGACAATGAAGAATTCTCTAGTGACGATGACAACGACTCTGATTTTTCCCATTTGATTCGTAAAGGGATTCAAGAATTGGAACCCTCCATTTTGGACCCCAGAGATTTTCGAACGGCTGATTGTTGGATCCACCGAAATGAATCCATGGTTCGTCTCACCGGTAAACATCCCTTCAATTCCGAGCCGTCGTTATCTCGTTTGATGCACCATGGGTTCATCACTCCCGTCCCGCTCCATTACGTTCGCAACCACGGTCCGGTACCCAAGGCCAAGTGGGAGGATTGGACCGTTGATGTTTGCGGTTTAGTCAAAAAACCAACCCGGTTCACTATGGATCAACTCGTTAACGATTTCAGGAGCCGTGAGTTTCCTGTCACACTCGTCTGCGCCGGAAACCGCCGTAAGGAGCAGAATATGGTTAAAAAAACCATTGGCTTTAGCTGGGGTGCAGGCGGGACTTCCACCTCAATCTGGCGAGGGGTCACACTACGAGACGTTCTGAAACGGTGTGGTATCTTCAGTAGTAAAAAAGGAGCACTCAATGTCTGCTTTGAAGGAGCTGAATGTCTGCCCGGCGGCGGCGGGTCCAAGTACGGTACTAGTGTCAGAAAGGAAATAGCCATGGACCCAGCTAGAGATATAATTTTAGCCTACATGCAAAACGGCGATGTACTGTCACCGGACCATGGTTTTCCGGTGCGGGTTATCATCCCCGGTTACATCGGTGGAAGGATGGTGAAATGGCTAAAACGCATTATTGTAACAACACAAGAATCCGATAGCTATTACCATTATAGAGACAACAAAGTCCTCCCTTCCCATGTCGATGCAGAATTAGCAAACGCAGAAGCTTGGTGGTATAAGCCGGAGTGTATTATTAGTGAGTTGAACATAAACTCGGTGATAACGACCCCATGCCACGAGGAAATCTTGCCGATAAATTCATTGACAACACAACGACCGTACACGTTGAGGGGATATGCATATTCCGGAGGAGGAAAGAAAGTGACACGGGTGGAGGTGACTTTAGATGGTGGCGAGTCGTGGCATCTTTGCGATTTGGACCGTCCTGAGAAAGCTACAAAATACGGCAAATATTGGTGTTGGTGTTTTTGGTCACTGGAAGTTGAGGTTCTTGATTTACTTGCTGCTAAGGAAATTGCAGTACGCGCTTGGGACGAAACTTTCAACACTCAACCTGAAAAGCTCATTTGGAATCTCATGGGAATGATGAACAATTGTTGGTTTCGAGTGAAAACCAACATGTGTAGACCGCATAAAGGAGAAATCGGAATTGTTTTTGAACACCCAACTGTACCCGGCAACCAATCCGGCGGATGGATGGCTAAAGAAAGACATCTCGAAATATCCACCGAACCAAATCAAACCATGAAGAAGAGTATCTCGTCTCCCTTCATCAACACAACCTCAAAGACTTACTCCATCTCTGACGTTCAAAAGCACAACTCAGACCAATCCGCCTGGATCGTCGTTCACGGCCATGTTTACGACTGCACCCGTTTCCTCAAAGACCACCCTGGCGGTACGGACAGCATTCTCATTAATGCCGGTACCGACTGTACGGAGGAATTCGACGCCATTCACTCGGACAAAGCCAAGAAAATGCTCGAGGAATACAGAATCGGCGAGTTGATCACCACCGGTTACACATCGGATTCATCGCCTAACAATTCCATCCATGGGGATCCTTCTAATTCTAATCCTCACTTAGATCCAATAACAGAAACAAGGCGCGTGGCTTTAATCCCGCGTGAGAAAATCCGCTGCAAATTAATTTCCAAAACGTCAATCTCACACGACGTCAGACGATTCAGATTCGCCTTGCCTTTAGAGGATCAAGTCCTGGGATTGCCTGTAGGGAAACACATATTCCTATGTGCAAACATAGACGGTAAGCTCTGTATGAGGGCCTACACACCAACCACCGGCATCAATCAAGTCGGCTATTTCGACTTAGTGGTCAAAATCTATTTCAAAAACGTGAACCCAAAATTTCCAAACGGCGGACTCATGTCTCAGCATTTGGAGTCTCTCCCACTTGGTTCCGAACTAGAAATCAAAGGCCCATTAGGCCACATCGAATACACCGGAAACGGAAACTTCGTGGTGGACGGCAAAGTAAAGAAGGGTAAGAAGCTAGCAATGTTGGCCGGCGGAACGGGAATAACGCCGATATATCAAGTGGCGCAGGCTGTTTTGAAGGATCCTGAGGATGAAACAGAGATGTTTTTGGTGTATGCGAATAGAACGGAAAATGATATTCTGTTAAAGGATGAGTTGGATGAATGGAGTAAAAGGGATAAGAGGTTTAAAGTGTGGTACGTTGTGAATGAGAGCGTAAGGGAAGGGTGGGAATATAGTGTGGGAGTGGTGACGGAGAGTATTATGAGGGAGCATCTTCCAGAAGCTTCGTCGGAAACAATGGCGTTGGCTTGTGGACCACCGCCGATGATTAAGTTTGCTGTGCAACCCAATTTGGAGAAGATGAATTACGACACTAATAACTCGTTGTTGGTGTTTTAG 2676 46.56 MATSIHNPQFSHLDSFSNLRSDSSLRCCNVPSIPNNHLQINNHDDNEEFSSDDDNDSDFSHLIRKGIQELEPSILDPRDFRTADCWIHRNESMVRLTGKHPFNSEPSLSRLMHHGFITPVPLHYVRNHGPVPKAKWEDWTVDVCGLVKKPTRFTMDQLVNDFRSREFPVTLVCAGNRRKEQNMVKKTIGFSWGAGGTSTSIWRGVTLRDVLKRCGIFSSKKGALNVCFEGAECLPGGGGSKYGTSVRKEIAMDPARDIILAYMQNGDVLSPDHGFPVRVIIPGYIGGRMVKWLKRIIVTTQESDSYYHYRDNKVLPSHVDAELANAEAWWYKPECIISELNINSVITTPCHEEILPINSLTTQRPYTLRGYAYSGGGKKVTRVEVTLDGGESWHLCDLDRPEKATKYGKYWCWCFWSLEVEVLDLLAAKEIAVRAWDETFNTQPEKLIWNLMGMMNNCWFRVKTNMCRPHKGEIGIVFEHPTVPGNQSGGWMAKERHLEISTEPNQTMKKSISSPFINTTSKTYSISDVQKHNSDQSAWIVVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFDAIHSDKAKKMLEEYRIGELITTGYTSDSSPNNSIHGDPSNSNPHLDPITETRRVALIPREKIRCKLISKTSISHDVRRFRFALPLEDQVLGLPVGKHIFLCANIDGKLCMRAYTPTTGINQVGYFDLVVKIYFKNVNPKFPNGGLMSQHLESLPLGSELEIKGPLGHIEYTGNGNFVVDGKVKKGKKLAMLAGGTGITPIYQVAQAVLKDPEDETEMFLVYANRTENDILLKDELDEWSKRDKRFKVWYVVNESVREGWEYSVGVVTESIMREHLPEASSETMALACGPPPMIKFAVQPNLEKMNYDTNNSLLVF 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9089573 9092706 - MELO3C010444.2.1 Cme07g00892 332908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00892 891 Pfam Oxidoreductase FAD-binding domain 640 746 IPR008333 -
Cme07g00892 891 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 519 601 IPR036400 -
Cme07g00892 891 Gene3D Translation factors 628 741 - -
Cme07g00892 891 PANTHER NADH-CYTOCHROME B5 REDUCTASE 54 891 IPR001834 GO:0016491
Cme07g00892 891 SUPERFAMILY E set domains 339 464 IPR014756 -
Cme07g00892 891 MobiDBLite consensus disorder prediction 598 623 - -
Cme07g00892 891 Gene3D - 78 329 IPR036374 -
Cme07g00892 891 PRINTS Cytochrome B5 signature 546 556 IPR001199 -
Cme07g00892 891 PRINTS Cytochrome B5 signature 556 570 IPR001199 -
Cme07g00892 891 PRINTS Cytochrome B5 signature 571 578 IPR001199 -
Cme07g00892 891 PRINTS Cytochrome B5 signature 583 595 IPR001199 -
Cme07g00892 891 SMART Cyt_b5_2 524 596 IPR001199 -
Cme07g00892 891 Pfam Oxidoreductase NAD-binding domain 766 873 IPR001433 GO:0016491
Cme07g00892 891 Pfam Cytochrome b5-like Heme/Steroid binding domain 527 595 IPR001199 -
Cme07g00892 891 Gene3D - 742 891 IPR039261 -
Cme07g00892 891 CDD eukary_NR_Moco 79 464 - -
Cme07g00892 891 SUPERFAMILY Riboflavin synthase domain-like 627 749 IPR017938 -
Cme07g00892 891 PRINTS Cytochrome B5 reductase signature 666 677 - -
Cme07g00892 891 PRINTS Cytochrome B5 reductase signature 687 694 - -
Cme07g00892 891 PRINTS Cytochrome B5 reductase signature 732 746 - -
Cme07g00892 891 PRINTS Cytochrome B5 reductase signature 765 784 - -
Cme07g00892 891 PRINTS Cytochrome B5 reductase signature 803 814 - -
Cme07g00892 891 PRINTS Cytochrome B5 reductase signature 859 867 - -
Cme07g00892 891 PRINTS Eukaryotic molybdopterin domain signature 94 108 IPR008335 GO:0016491
Cme07g00892 891 PRINTS Eukaryotic molybdopterin domain signature 116 132 IPR008335 GO:0016491
Cme07g00892 891 PRINTS Eukaryotic molybdopterin domain signature 169 180 IPR008335 GO:0016491
Cme07g00892 891 PRINTS Eukaryotic molybdopterin domain signature 180 192 IPR008335 GO:0016491
Cme07g00892 891 PRINTS Eukaryotic molybdopterin domain signature 195 210 IPR008335 GO:0016491
Cme07g00892 891 PRINTS Eukaryotic molybdopterin domain signature 253 269 IPR008335 GO:0016491
Cme07g00892 891 PRINTS Eukaryotic molybdopterin domain signature 270 283 IPR008335 GO:0016491
Cme07g00892 891 PRINTS Eukaryotic molybdopterin domain signature 286 299 IPR008335 GO:0016491
Cme07g00892 891 PRINTS Eukaryotic molybdopterin domain signature 337 349 IPR008335 GO:0016491
Cme07g00892 891 PRINTS Eukaryotic molybdopterin domain signature 368 382 IPR008335 GO:0016491
Cme07g00892 891 PRINTS Eukaryotic molybdopterin domain signature 382 394 IPR008335 GO:0016491
Cme07g00892 891 PRINTS Eukaryotic molybdopterin domain signature 409 419 IPR008335 GO:0016491
Cme07g00892 891 PRINTS Eukaryotic molybdopterin domain signature 434 446 IPR008335 GO:0016491
Cme07g00892 891 PRINTS Eukaryotic molybdopterin domain signature 447 460 IPR008335 GO:0016491
Cme07g00892 891 Pfam Oxidoreductase molybdopterin binding domain 128 307 IPR000572 -
Cme07g00892 891 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 555 565 IPR001709 GO:0016491
Cme07g00892 891 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 687 694 IPR001709 GO:0016491
Cme07g00892 891 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 765 784 IPR001709 GO:0016491
Cme07g00892 891 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 791 800 IPR001709 GO:0016491
Cme07g00892 891 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 803 814 IPR001709 GO:0016491
Cme07g00892 891 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 835 851 IPR001709 GO:0016491
Cme07g00892 891 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 859 867 IPR001709 GO:0016491
Cme07g00892 891 Gene3D - 517 597 IPR036400 -
Cme07g00892 891 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 735 886 IPR039261 -
Cme07g00892 891 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 145 180 IPR022407 GO:0043546
Cme07g00892 891 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 552 559 IPR018506 GO:0020037
Cme07g00892 891 PANTHER NITRATE REDUCTASE 54 891 - -
Cme07g00892 891 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 521 596 IPR001199 -
Cme07g00892 891 CDD cyt_b5_reduct_like 640 886 - -
Cme07g00892 891 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 635 747 IPR017927 GO:0016491
Cme07g00892 891 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 76 337 IPR036374 -
Cme07g00892 891 Pfam Mo-co oxidoreductase dimerisation domain 336 465 IPR005066 GO:0016491|GO:0030151
Cme07g00892 891 MobiDBLite consensus disorder prediction 36 55 - -
Cme07g00892 891 MobiDBLite consensus disorder prediction 598 624 - -
Cme07g00892 891 PIRSF Nitr_rd_NADH 10 890 IPR012137 GO:0006809|GO:0042128|GO:0050464
Cme07g00892 891 Gene3D - 339 514 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00892 K10534 NR; nitrate reductase (NAD(P)H) [EC:1.7.1.1 1.7.1.2 1.7.1.3] - csv:101216001 1674.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00892 Cme-Chr7:9089573 Cme09g00850 Cme-Chr9:11283247 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g325 . . . . . . . . Cmo04g02441 Cmo15g00727 . Cma09g00664 . . . Cpe06g00519 . . . . . . . . . . . . . . . . . . Cone20ag0466 Lsi04g02366 Csa04g01830 . . Blo17g00195 Blo18g00197 . Bda13g01500 Bpe02g01621 Bpe14g00366 Bma01g00839 Bma02g00239 Sed04g0506 . Cmo09g00648 . . Car04g02252 Car09g00590 Cpe01g02024 . Bhi09g02640 Tan01g3984 Cmetu09g0993 . Hepe01g2257 Mch11g0805 . Cla11g01515 Cam11g1575 Cec11g1604 Cco11g1602 Clacu11g1730 Cmu11g1548 Cre11g1965 . . Chy07g00682 Cme07g00892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000829 1 3 2 3 2 2 4 3 3 3 3 3 4 2 3 6 3 1 4 3 5 4 3 3 3 4 3 3 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g00892 Cme_Chr07 FPKM 0.583452 0.639553 0.0 0.393104 2.403586 3.873611 3.733998 0.650488 0.68161 0.364112