Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00916 ATGGCAGCTGCCATGGATTTCTATAATGAAGGATCGCAAACAGACCACTTCGGTGGTGAACTAATGGAAGCAATTGTACCTTTTATTAAAGTTGCTTCCTCCTCTTCTTCCTCTCTCTCTACTTTCCCTTCTTCTTCTTCTTCTTCTTCTTCACCAACACCTTATCTCCCTCCTCATTATTCTTCTTCCTTCAATACTCACCTCAACTTCTCTCACTCTGCTTCTCAACAGTCCAATTTGTACCCAAATGGCTGCTCCACTTCGATGAACCCAGTATTTTCAGATGGGTTCTCGACCCAAAACCTCATTGGTTTCGAACAGCCATTCACAATTGGACCCCATCAGTTATCATCATCTCAAATCCCTCATTCCCAACCTCAAAACAGCTTTCTTCAAAACCAAACCCCACTAGCCTTTGCTTGGGGCGAACAAAACTATCAACCACCATCCTCCTCTGAACAACAAACGCCCAGCTTCCTCGCCCCCAAGCCGATCCCAATGAAGCAAGTGGGTTCGTCTTCAAAACCCACTAAGCTTTACAGAGGGGTCAGGCAACGGCACTGGGGAAAATGGGTGGCCGAGATCCGACTCCCTAGGAACCGAACTCGGCTCTGGCTTGGTACCTTTGACACTGCTGAAGAAGCTGCCTTGGCATATGACGAGGCAGCCTTCAAGCTCCGAGGGGATTCTGCCAGACTTAATTTCCCCAACCTCAAGCACCAAGGTTCCTGCGTTGAAGGCGAATTCGGCGAGTACAGACCTCTACATTCCTCTGTAGCTGCAAAGCTCCAAGCAATTTGTGATAACTTGGCCAAGCCGCAGAAACAAGGCAACTCAAAGAAGCCTGTTACTGCAGCTAAGAAGTCAAGGTCCCAATTCTGCTCAATGGCTGAGGAAACAGCAGCTGTTAAGGTGGAGAACTCCTCGTCGCGGGCTGTCACTGAGAGCGACGGGTCTGAAGCGTCTTCGCCTTTATCAGATCTTACATTTCCTGACTTCACAGAGTTGCCATGGGATCAGAATCAAGCTTGGGAGAATTCAATGCTAGAGAAATATCCATCGGAGATCGATTGGGCATCGATCTTATCTTAA 1092 47.99 MAAAMDFYNEGSQTDHFGGELMEAIVPFIKVASSSSSSLSTFPSSSSSSSSPTPYLPPHYSSSFNTHLNFSHSASQQSNLYPNGCSTSMNPVFSDGFSTQNLIGFEQPFTIGPHQLSSSQIPHSQPQNSFLQNQTPLAFAWGEQNYQPPSSSEQQTPSFLAPKPIPMKQVGSSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDEAAFKLRGDSARLNFPNLKHQGSCVEGEFGEYRPLHSSVAAKLQAICDNLAKPQKQGNSKKPVTAAKKSRSQFCSMAEETAAVKVENSSSRAVTESDGSEASSPLSDLTFPDFTELPWDQNQAWENSMLEKYPSEIDWASILS 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9532937 9535013 - MELO3C010425.2.1 Cme07g00916 332932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00916 363 SMART rav1_2 179 242 IPR001471 GO:0003700|GO:0006355
Cme07g00916 363 SUPERFAMILY DNA-binding domain 179 236 IPR016177 GO:0003677
Cme07g00916 363 ProSiteProfiles AP2/ERF domain profile. 179 236 IPR001471 GO:0003700|GO:0006355
Cme07g00916 363 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 361 - -
Cme07g00916 363 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 361 - -
Cme07g00916 363 CDD AP2 178 238 IPR001471 GO:0003700|GO:0006355
Cme07g00916 363 Gene3D AP2/ERF domain 179 237 IPR036955 GO:0003700|GO:0006355
Cme07g00916 363 MobiDBLite consensus disorder prediction 305 328 - -
Cme07g00916 363 PRINTS Ethylene responsive element binding protein signature 180 191 IPR001471 GO:0003700|GO:0006355
Cme07g00916 363 PRINTS Ethylene responsive element binding protein signature 202 218 IPR001471 GO:0003700|GO:0006355
Cme07g00916 363 Pfam AP2 domain 180 228 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01510 Cme-Chr3:24345359 Cme07g00916 Cme-Chr7:9532937 9.99E-109 dispersed
Cme05g00716 Cme-Chr5:8372399 Cme07g00916 Cme-Chr7:9532937 1.63E-34 dispersed
Cme07g00916 Cme-Chr7:9532937 Cme08g00782 Cme-Chr8:5224298 7.50E-67 dispersed
Cme07g00916 Cme-Chr7:9532937 Cme06g01318 Cme-Chr6:11054626 1.36E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41636 PF00847 AP2 1.00E-15 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00916 K09286 - csv:101214560 648.662