Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00923 ATGAGTGACAAGAGAGAGAATTCAGTTGATGAGAAACTTGAAACAAAGGAGAAGGATAACAGAAGTTTGATTCCAGATAATCAAGCGCAGGATGAGCGATACGTTCACAAAGTTGGGGTTCCACCAAAGCAAAAACTCTACAAAGAAATCAAGTCTGCAGTGAAAGAAACATTTTTCCCAGATGATCCTCTCCGTTCATTCAAGGATCAAACAAAGAAGCGGAAATTTATACTCGGCATCCAAGCTGTTTTTCCTATACTTGATTGGGGAAGAACTTATAATTTGACTAAGTTTAGAGGAGATGTTATTTCTGGATTAACAATTGCTAGTCTTTGCATCCCACAGGATATTGGGTATGCCAAGCTTGCAAATTTGTCTCCAGAGTATGATTCCAGTTTTGTTCCACCATTAATCTATGCACTTATGGGTAGCTCAAGAGATATAGCCATCGGTCCAGTTGCTGTTGTTTCTCTCTTGTTGGGGACACTGCTTCAAGAGGAAATTGATTCTGCTATGAATCCAAAAGACTACCTGCGGCTAGCATTTACAGCTACATTTTTTGCAGGGATCACACAAGCCACCCTTGGAATTCTGAGGTTGGGATTCCTTATTGACTTCTTGTCCCATGCTGCCATTGTTGGCTTCATGGGAGGAGCTGCCATCACCATTGCTCTCCAACAACTCAAAGGCTTTCTTGGCATAAAGAAGTTTACAAAGAAAACAGATATTATCTCTGTTATGCAGTCCGTATTTGGTTCAATGAGACACGGAGGGAAGAAGAACAAGAGGCTCTTCTGGGTGCCTGCAATTGCTCCACTTATATCTGTTGTACTGTCTACCCTTCTCGTCTTTATTACTCGAGCAGATAAGGAAGGAGTTGCAATTGTGAAACACATAGAAAAAGGAATCAATCCCCCATCTGTAAAAGACTTATTTTTATCAGGCGAATACCTTCTAAAAGGGTTTAAGATTGGTGTAGTGGCGGGAATGGTGGCACTGACGGAAGCCGTTGCGATTGGAAGAACATTTGCTTCAATGAAAGACTATCAAATAGATGGGAACAAGGAAATGGTAGCAATGGGAGTCATGAATGTTGTTGGTTCAATGTCTTCCTGCTATGTAGCAACAGGATCATTCTCTCGATCGGCCGTAAATTACATGGCTGGCTGCCAAACTGCAGTCTCTAACATTGTGATGTCCATTGTAGTACTACTAACTTTGGCATTCCTCACCCCACTTTTCAAATACACTCCTAATGCGATTCTGTCTGCTATCATCATATCCGCTGTGATCAACCTGATCGACTTGTACGCAGTGAAACTGATTTGGAAGATTGATAAATTTGATTTTGTTGCTTGTATGGGAGCCTTCTTCGGTGTCATCTTTTTCTCTGTTGAGATAGGCCTTCTTGTTGCGGTATGCATTTCCTTCGCCAAAATCCTTCTACAAGTTACCAGGCCAAGGACTGCAATTCTCGGAAAGATCCCAAGGACGACCGTTTATCGAAACATACTACAATATCCTGAAGCAACCAAGGTTCCTGGCGTTTTGATTGTGAGAGTTGATTCGGCAATTTACTTTTCCAACTCCAATTACATCAAGGAAAGGATATTGAGATGGCTGGTTGATGAGGAAGAACAAACAAAAAAGTTATACCAGAACAAAATCCAGTTTCTAATAGTTGAAATGTCACCTGTTACTGACATAGACACCAGTGGCATACATGCTTTGGAAGAGCTAAATGGGAGCCTGAAGAAACGAGAAATTCAGCTCATTCTAGCAAATCCAGGGCCCGTGGTGATGCACAAACTACACGCATCGGAGTTTGTTGATTTAATAGGCCAAGACAATATCTTTCTCACAGTTGCAGATGCGGTCTCATCTTGTAATCTAAAGATAATGAACGACGTTTGA 1914 41.43 MSDKRENSVDEKLETKEKDNRSLIPDNQAQDERYVHKVGVPPKQKLYKEIKSAVKETFFPDDPLRSFKDQTKKRKFILGIQAVFPILDWGRTYNLTKFRGDVISGLTIASLCIPQDIGYAKLANLSPEYDSSFVPPLIYALMGSSRDIAIGPVAVVSLLLGTLLQEEIDSAMNPKDYLRLAFTATFFAGITQATLGILRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKKFTKKTDIISVMQSVFGSMRHGGKKNKRLFWVPAIAPLISVVLSTLLVFITRADKEGVAIVKHIEKGINPPSVKDLFLSGEYLLKGFKIGVVAGMVALTEAVAIGRTFASMKDYQIDGNKEMVAMGVMNVVGSMSSCYVATGSFSRSAVNYMAGCQTAVSNIVMSIVVLLTLAFLTPLFKYTPNAILSAIIISAVINLIDLYAVKLIWKIDKFDFVACMGAFFGVIFFSVEIGLLVAVCISFAKILLQVTRPRTAILGKIPRTTVYRNILQYPEATKVPGVLIVRVDSAIYFSNSNYIKERILRWLVDEEEQTKKLYQNKIQFLIVEMSPVTDIDTSGIHALEELNGSLKKREIQLILANPGPVVMHKLHASEFVDLIGQDNIFLTVADAVSSCNLKIMNDV 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9689593 9693221 - MELO3C010419.2.1 Cme07g00923 332939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00923 637 TIGRFAM sulP: sulfate permease 256 625 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cme07g00923 637 Coils Coil 542 562 - -
Cme07g00923 637 Pfam Sulfate permease family 98 255 IPR011547 GO:0016021
Cme07g00923 637 Pfam Sulfate permease family 258 454 IPR011547 GO:0016021
Cme07g00923 637 CDD STAS_SulP_like_sulfate_transporter 507 622 - -
Cme07g00923 637 PANTHER SULFATE TRANSPORTER 1.3 258 637 - -
Cme07g00923 637 PANTHER SULFATE TRANSPORTER 27 256 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cme07g00923 637 PANTHER SULFATE TRANSPORTER 258 637 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cme07g00923 637 Pfam STAS domain 507 625 IPR002645 -
Cme07g00923 637 Gene3D STAS domain 486 633 IPR036513 -
Cme07g00923 637 MobiDBLite consensus disorder prediction 1 28 - -
Cme07g00923 637 SUPERFAMILY SpoIIaa-like 508 629 IPR036513 -
Cme07g00923 637 ProSiteProfiles STAS domain profile. 506 629 IPR002645 -
Cme07g00923 637 PANTHER SULFATE TRANSPORTER 1.3 27 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02045 Cme-Chr1:29209263 Cme07g00923 Cme-Chr7:9689593 7.60E-121 dispersed
Cme07g00923 Cme-Chr7:9689593 Cme09g00879 Cme-Chr9:11871499 0 dispersed
Cme09g00880 Cme-Chr9:11955391 Cme07g00923 Cme-Chr7:9689593 6.25E-97 dispersed
Cme07g00923 Cme-Chr7:9689593 Cme01g02672 Cme-Chr1:34201307 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00923 K17470 - csv:101207370 1180.24