Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g00938 ATGCCAACGGGCGTGCGCGTGGCAGGGCTTATGCGCGCACCAACCCCAACCATCAGCGCCGCTTCTTCCTTCTTCTTCCTCTTTTTCTTCCTCTCATCTTCATGCATTATTGTGGTCTTCTCGGCTTCTGATGCCGAAACTTTGCTTCAATTCAAGCAATCTTTGACATCGGCCACGGCTCTTAACAATTGGAACCCTTCGGTTCCGCCTTGCGAGAACCACAAGGCGAATTGGGCTGGAGTGCTTTGTTTGAATGGGCACGTTAGGGGTCTAAGGCTTGAAAATATGGGACTTAAGGGAGAAGTTGATATGAATTCCCTGGTTTCATTGACTCGTTTGCGTACACTTAGCTTCATGAACAACACATTGGTTGGGTCTTGGCCTCCTGTTATAACCAAATTAGGAAGTTTGCGGTCTGTTTATCTTTCCTATAACCATTTTTCAGGAGAAATCCCAGATGATGCCTTTACGGGTATGAAATTTTTGAAGAAAGTGTTTTTGACCAATAATGAATTCAACGGCCCAATTCCCTCATCTCTCGCTTCACTGTCTAGGCTTATAGAGTTGAGACTCGATGGTAACAAATTCAAAGGCCAAGTCCCTCAATTTCAAATAGATACTTTGACCAAACTCAATGTTTCCAACAACGAATTGGACGGCCCTATTCCTACTAGTTTAAGCCATATGGATCCTTCATGCTTTTCAGGCAACAATGATCTATGCGGGGATCCACTGCCAGAATGTGGAAAAGCCCCAATGTCATCCTCAGGGCTACTAAAGATCGCAGTGATAATCATAATTTTGGGGGTAACATTAGCAGTAATAGCTGCAATTTTCATCATATTGAATTTAAGAAACCAGCCAGCAGCATTACAACTAGGGAAGGAGAATGCAGGGATGATAAACATGGAACATCAAGATCAGAAGAAATACGTGAACGCTAAGCAGGTAGCAGCCGGGGTAGGGGACGGATACAGATCAATAGAGTCGTCGTCGTCGTCTGTGGCTCAGGCCACGAGGCGAGGAGGGGCCGATCATGGAAAACTGTTGTTTGTGAGGGATGACAGGGAGAGGTTCGATTTACAAGACTTGTTAAGAGCATCGGCTGAAATATTGGGGAGTGGGTCATTTGGTTCGTCGTATAAAGCAACAATACTTAGTAATGCAGTGGTGGTGAAGCGTTATAAGCATATGAATAATGTGGGAAGAGAAGAGTTTCATGAGCATATGAGAAGGTTAGGGAGGTTGACGCATCCGAATTTACTTCCTTTGGTTGCTTATTATTATAGGAAGGAAGAGAAGCTGTTGATTTCGGACTTTGTGGATAATGGGAGCTTGGCCAGCCATTTGCATGGGAACCACAACCTGGAGGAGGCAGGACTAGATTGGGCAACAAGATTGAAGATAATAAGAGGCATAGCAAGAGGCCTATCTTACCTATACGCATCGCTCCCAAACATAGTAGCAGCACATGGACATCTCAAATCTTCAAATGTGTTGCTAGACGAGTCCATGGAGCCACTGCTGACGGACTACGGTCTAAGCCCAGTAGCCAATCTAGAGCAAGGGCAGAGCCTAATGATGGCCTACAAATCCCCTGAGTATGCTCAAATGGGTCGCATAACCAAGAAGACAGACATCTGGAGTTTCGGAATAGTCATTCTTGAAATGTTAACTGGCAGATTCCCAGAAAACTACCTGACACGAAATCACGATCCGAAAGCCGACCTTGCGGCTTGGGTTAACAACATGATCAAGGAAAAGAAGACGGCGCAAGTGTTTGACACCGAGCTGGGGCGAGCCAGGGAAAGTAGTAAAGGGGAGTTACTGAAGATGCTTAAGATTGCGTTGAGTTGCTGTGAAGAAGATGTTGATAGACGATTGGATTTGAATCAAGTAGCTGCAGAGATTGAAGATTTGAATGATGCAGATTTGAGTGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGGACATAACTTCTCCCCTACTTCTCGCCATATTCATATTGCTGTTTGA 2031 44.76 MPTGVRVAGLMRAPTPTISAASSFFFLFFFLSSSCIIVVFSASDAETLLQFKQSLTSATALNNWNPSVPPCENHKANWAGVLCLNGHVRGLRLENMGLKGEVDMNSLVSLTRLRTLSFMNNTLVGSWPPVITKLGSLRSVYLSYNHFSGEIPDDAFTGMKFLKKVFLTNNEFNGPIPSSLASLSRLIELRLDGNKFKGQVPQFQIDTLTKLNVSNNELDGPIPTSLSHMDPSCFSGNNDLCGDPLPECGKAPMSSSGLLKIAVIIIILGVTLAVIAAIFIILNLRNQPAALQLGKENAGMINMEHQDQKKYVNAKQVAAGVGDGYRSIESSSSSVAQATRRGGADHGKLLFVRDDRERFDLQDLLRASAEILGSGSFGSSYKATILSNAVVVKRYKHMNNVGREEFHEHMRRLGRLTHPNLLPLVAYYYRKEEKLLISDFVDNGSLASHLHGNHNLEEAGLDWATRLKIIRGIARGLSYLYASLPNIVAAHGHLKSSNVLLDESMEPLLTDYGLSPVANLEQGQSLMMAYKSPEYAQMGRITKKTDIWSFGIVILEMLTGRFPENYLTRNHDPKADLAAWVNNMIKEKKTAQVFDTELGRARESSKGELLKMLKIALSCCEEDVDRRLDLNQVAAEIEDLNDADLSDDDDDDDDDDDDDDDGHNFSPTSRHIHIAV 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9844632 9847300 - MELO3C010412.2.1 Cme07g00938 332954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g00938 676 Pfam Leucine rich repeat 136 196 IPR001611 GO:0005515
Cme07g00938 676 Gene3D Phosphorylase Kinase; domain 1 331 440 - -
Cme07g00938 676 MobiDBLite consensus disorder prediction 639 676 - -
Cme07g00938 676 ProSiteProfiles Protein kinase domain profile. 366 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g00938 676 Pfam Protein tyrosine and serine/threonine kinase 370 635 IPR001245 GO:0004672|GO:0006468
Cme07g00938 676 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Cme07g00938 676 Pfam Leucine rich repeat N-terminal domain 42 83 IPR013210 -
Cme07g00938 676 Gene3D Ribonuclease Inhibitor 43 156 IPR032675 -
Cme07g00938 676 SUPERFAMILY L domain-like 68 234 - -
Cme07g00938 676 PANTHER POLLEN RECEPTOR-LIKE KINASE 5 19 650 - -
Cme07g00938 676 SUPERFAMILY Protein kinase-like (PK-like) 370 637 IPR011009 -
Cme07g00938 676 Gene3D Ribonuclease Inhibitor 157 249 IPR032675 -
Cme07g00938 676 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 650 - -
Cme07g00938 676 MobiDBLite consensus disorder prediction 640 662 - -
Cme07g00938 676 Gene3D Transferase(Phosphotransferase) domain 1 441 664 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01648 Cme-Chr2:23696033 Cme07g00938 Cme-Chr7:9844632 0 dispersed
Cme03g01708 Cme-Chr3:25715727 Cme07g00938 Cme-Chr7:9844632 8.92E-175 dispersed
Cme05g02085 Cme-Chr5:29058644 Cme07g00938 Cme-Chr7:9844632 2.43E-147 dispersed
Cme07g00938 Cme-Chr7:9844632 Cme06g01547 Cme-Chr6:15328506 1.25E-112 dispersed
Cme07g00938 Cme-Chr7:9844632 Cme04g00319 Cme-Chr4:2496731 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65010 PF07714 PK_Tyr_Ser-Thr 1.60E-30 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g00938 - - cmo:103487533 1254.58