Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01021 ATGGGAAGAGGAATAGTAGAGTTGAAGAGGATAGAGAACAAAATAAACAGACAAGTAACATTTGCAAAGAGAAGAAATGGGCTTTTGAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCAACCGTGGCAAGCTCTATGAATTCTGTAGTACTTCCAATATGCTTAAAACACTGGAGAGGTACCAAAAATGCAGTTATGGAGCGGTGGAGGTCACAAAACCGGCTAAAGAACTCGAGAGTAGTTATAGAGAGTACGTGAAGCTGAAGTCTAGGTTTGAGTCTCTACAAAGAACTCAGAGAAATCTTCTTGGGGAGGACTTGGGTCCATTGAACTCAAAAGAGCTTGAGCAGCTGGAGCGTCAGCTTGAGTCTTCTTTGAAGCAAGTTAGGTCTACCAAGACTCAGTACATGCTGGACCAACTATCTGATCTTCAGAACAAGGAACAAATGCTGATTGAAACCAACAGAGCTCTGCAAATGAAGCTGGAAGAAATAAGTTCAAGAAATAATATAAGGCATCCATGGGATGGTGGAGATCAAAGCATGTCATATGGTACACAAAATGCCCAAACTCAAGGCTTCTTTCAGCCACTAGATTGCAACCCCACTTTGCAAATTGGGTACACTTCTGCAGTATCAGACCAAATTACAAGCACTACTACTCCAACTCATGCCCAACAAGTCAATGGCTTCCTCCCTGGTTGGATGCTTTGA 741 41.97 MGRGIVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVTKPAKELESSYREYVKLKSRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRALQMKLEEISSRNNIRHPWDGGDQSMSYGTQNAQTQGFFQPLDCNPTLQIGYTSAVSDQITSTTTPTHAQQVNGFLPGWML 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11591766 11600214 + MELO3C026300.2.1 Cme07g01021 333037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01021 246 Coils Coil 150 170 - -
Cme07g01021 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cme07g01021 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cme07g01021 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cme07g01021 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme07g01021 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Cme07g01021 246 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Cme07g01021 246 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 231 - -
Cme07g01021 246 Coils Coil 121 144 - -
Cme07g01021 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme07g01021 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme07g01021 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme07g01021 246 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme07g01021 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cme07g01021 246 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01461 Cme-Chr3:23893794 Cme07g01021 Cme-Chr7:11591766 9.17E-82 dispersed
Cme07g01021 Cme-Chr7:11591766 Cme11g02324 Cme-Chr11:30303986 1.11E-109 dispersed
Cme07g01021 Cme-Chr7:11591766 Cme07g01023 Cme-Chr7:11749033 3.39E-57 proximal
Cme07g00807 Cme-Chr7:7608414 Cme07g01021 Cme-Chr7:11591766 5.07E-36 transposed
Cme12g01920 Cme-Chr12:25234067 Cme07g01021 Cme-Chr7:11591766 3.25E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41637 PF01486 K-box 4.70E-27 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01021 K09264 - csv:101208204 463.381