Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01023 ATGGGAAGAGGGAGAGTTCAGCTGAAGAGAATAGAGAACAAAATCAGCCGCCAAGTCACTTTCTCAAAGCGTAGAGCTGGTTTACTCAAAAAGGCTCATGAGATCTCTGTTCTTTGTGAAGCTGATGTTGCTTTGATTGTTTTCTCCACCAAAGGAAAACTCTTCGAGTACTCCTCTGATTCCAGCATGGAGAAGATCTTAGAAAAATATGAGAGATATTCTTATGCAGAGAGACCGTTCGCCCCAAGTGGAGATTCTGAATTACAGACAAGTTGGTGTCAGGAGTATCCAAAACTTACAGCCAGATTGGAAATTGTACAGAAGAACTTAAGGCATTATTTGGGTGAAGATCTCGACCCTCTGAATTTGAGAGAACTTCAAAGCTTAGAGCAACAACTTGATACATCACTCAAGCGCATAAGATCTAGAAAGAACCAACTAATGCAAGAATCTATTTCAATATTGCACAAAAAGGAAAAGGCATTGCAAGAGGAGAACAGGCAGCTAGCAAATAAGGTAAAGGAAAATGAGAAGGCTTTGGTTGAACGTGGACAGTGCGATGTTCCAAACTTGGTTCATAATAAACAGCTCATTTTTGGAATGACACCACCAATTCCTTCTTTATCTTTCGGAGCGAACTTGAATGGGAGAGGATCAAGAGGATCAGATGAAGATGAAACAAGGCCAACAAGCATCGACAACATCCAAATACCAGCGTGGATGCTTCGCCATGTGACTGAAAATTCTAATAACTAA 756 40.74 MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCEADVALIVFSTKGKLFEYSSDSSMEKILEKYERYSYAERPFAPSGDSELQTSWCQEYPKLTARLEIVQKNLRHYLGEDLDPLNLRELQSLEQQLDTSLKRIRSRKNQLMQESISILHKKEKALQEENRQLANKVKENEKALVERGQCDVPNLVHNKQLIFGMTPPIPSLSFGANLNGRGSRGSDEDETRPTSIDNIQIPAWMLRHVTENSNN 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11749033 11755493 + MELO3C026299.2.1 Cme07g01023 333039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01023 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cme07g01023 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Cme07g01023 251 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cme07g01023 251 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Cme07g01023 251 MobiDBLite consensus disorder prediction 210 233 - -
Cme07g01023 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme07g01023 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme07g01023 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme07g01023 251 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8-LIKE PROTEIN 1 231 - -
Cme07g01023 251 Coils Coil 126 150 - -
Cme07g01023 251 Coils Coil 152 182 - -
Cme07g01023 251 Pfam K-box region 89 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme07g01023 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cme07g01023 251 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme07g01023 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cme07g01023 251 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Cme07g01023 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01023 Cme-Chr7:11749033 Cme12g01920 Cme-Chr12:25234067 3.24E-87 dispersed
Cme08g00026 Cme-Chr8:211301 Cme07g01023 Cme-Chr7:11749033 3.88E-38 dispersed
Cme07g01021 Cme-Chr7:11591766 Cme07g01023 Cme-Chr7:11749033 3.39E-57 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41638 PF01486 K-box 6.20E-29 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01023 K09264 - csv:101218674 485.337