Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01180 ATGTCGGTGATGCTGGGCTCTTCTTCCTCTTCTTTGTGGTTCATTTTCTTTCTGGGTTTTGTTTCCTTGCTCTCTGCTAATCCTGAAGGTGATGCTTTGAATGCATTGAAGTCAAATTTACAAGATCCCAACGGTGTATTACAGAGTTGGGATCCGACTCTTGTTAATCCTTGCACATGGTTCCATGTCACCTGTGACAGTGAGAATAGTGTCACTCGAGTTGACCTTGGAAATGCCAATCTATCTGGCACGTTGGTTCCACAACTTGGCGATCTTCATAATTTGCAATATTTGGAGCTTTACAGTAACAATATTACTGGAGAAATTCCGCCTGAGATTGGGCTTTTGACAAACCTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCCCATACCATTCACACTTGGAGAGCTTCAAAAACTGCGTTTCCTGCGTCTTAACAACAACAGCTTATCGGGAACAATTCCAGTGCCATTAACTAATGTTAAATCCTTGCAAGTCCTGGATCTTTCATACAACCAGCTAACTGGAGATATCCCGGTCAATGGTTCTTTTTCTCTGTTTACCCCTATCAGTTTTGCTCATAATAAGCTTAATGAATCTGCTGTGCGTACTCCACCACCTCCTCTACCTTCTTCACCAAGCCCCATATCAGGCAATAGTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGCTGCTGCTTTACTCTTTGCTGCTCCTGCTGTTGCTGTTGCTTTGTGGCGTCGGAAGAAACCACAAGATCATTTCTTTGATGTACCTGCCGAAGAGGATCCGGAAGTTCATCTTGGTCAGCTTAAGAGGTTCTCTCTTCGTGAACTACAAGTTGCAACAGATCATTTTAGCAACAAACATATTCTGGGTAGAGGTGGTTTTGGCAAGGTCTATAAGGGACGGTTGGCTGATGGGTCTCTAGTGGCAGTAAAAAGACTCAAAGAGGAGCGTTCACAGGGTGGGGAGCTGCAATTCCAAACAGAAGTGGAGATGATAAGCATGGCTGTGCATCGTAATCTGCTCCGTCTTCGTGGCTTTTGTATGACACCAACTGAGCGGTTGTTGGTCTATCCATTTATGGTTAACGGAAGTGTAGCATCATGTTTGAGAGAACGTCCAGACACACAACCTCCACTTAATTGGTTGAATCGGAAACGTATTGCTTTGGGAGCGGCAAGGGGGCTTGCTTATCTACATGATCATTGTGATCCTAAGATTATTCATCGTGATGTGAAAGCTGCAAACATTTTACTTGACGAGGAGTATGAAGCTGTTGTTGGTGATTTTGGGTTGGCTAAACTCATGGACTACAAAGATACTCATGTCACAACTGCAGTACGGGGAACTATTGGGCATATAGCTCCTGAATACCTTTCAACTGGAAAATCTTCTGAAAAGACTGATGTTTTTGGGTATGGGGTAATGCTTCTTGAACTCATAACTGGACAGAGGGCCTTTGATCTTGCCCGGCTTGCAAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTTCTAAAAGACAAGAGGTTGGAAACACTAGTTGATCCTGATCTTGCGGGGAAATATCCAGACGATGAAGTTGAGCAGCTTATACAAGTTGCCTTGTTGTGCACACAAGGCACTCCTACAGAACGGCCTAAGATGTCAGAGGTTGTACGGATGCTTGAGGGTGATGGTTTAGCTGAAAGATGGGAAGAATGGCAGAAAGAGGAGCGGTTTCACCAAGACCTAAGCCGCAATCCCCACCCAAGTACGACTTGGATTCTCGACTCTACTGCTGAAATTCCTCCCGATGAATTGTCCGGTCCAAGATGA 1842 44.63 MSVMLGSSSSSLWFIFFLGFVSLLSANPEGDALNALKSNLQDPNGVLQSWDPTLVNPCTWFHVTCDSENSVTRVDLGNANLSGTLVPQLGDLHNLQYLELYSNNITGEIPPEIGLLTNLVSLDLYLNNLTGPIPFTLGELQKLRFLRLNNNSLSGTIPVPLTNVKSLQVLDLSYNQLTGDIPVNGSFSLFTPISFAHNKLNESAVRTPPPPLPSSPSPISGNSATGAIAGGVAAAAALLFAAPAVAVALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDHFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRERPDTQPPLNWLNRKRIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDPDLAGKYPDDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWEEWQKEERFHQDLSRNPHPSTTWILDSTAEIPPDELSGPR 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15868183 15877074 - MELO3C019027.2.1 Cme07g01180 333196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01180 613 Gene3D Transferase(Phosphotransferase) domain 1 367 584 - -
Cme07g01180 613 ProSiteProfiles Leucine-rich repeat profile. 166 188 IPR001611 GO:0005515
Cme07g01180 613 Gene3D Ribonuclease Inhibitor 26 207 IPR032675 -
Cme07g01180 613 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Cme07g01180 613 PANTHER BNAA08G11770D PROTEIN 9 613 IPR031048 GO:0004675|GO:0005102|GO:0006468
Cme07g01180 613 SMART serkin_6 290 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01180 613 Pfam Protein kinase domain 291 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01180 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Cme07g01180 613 ProSiteProfiles Protein kinase domain profile. 290 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01180 613 MobiDBLite consensus disorder prediction 580 613 - -
Cme07g01180 613 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Cme07g01180 613 SUPERFAMILY Protein kinase-like (PK-like) 269 565 IPR011009 -
Cme07g01180 613 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 613 - -
Cme07g01180 613 ProSiteProfiles Leucine-rich repeat profile. 94 116 IPR001611 GO:0005515
Cme07g01180 613 Gene3D Phosphorylase Kinase; domain 1 259 366 - -
Cme07g01180 613 SUPERFAMILY L domain-like 28 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00260 Cme-Chr1:1918658 Cme07g01180 Cme-Chr7:15868183 0 dispersed
Cme02g00437 Cme-Chr2:3669354 Cme07g01180 Cme-Chr7:15868183 1.51E-64 dispersed
Cme07g01180 Cme-Chr7:15868183 Cme07g01730 Cme-Chr7:22801598 0 dispersed
Cme11g02356 Cme-Chr11:30570709 Cme07g01180 Cme-Chr7:15868183 2.64E-52 dispersed
Cme11g02357 Cme-Chr11:30578540 Cme07g01180 Cme-Chr7:15868183 4.90E-40 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65014 PF00069 Pkinase 4.30E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01180 K13416 - csv:101216389 1138.64