Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01183 ATGCTTGCAGTTTGCGAGAAAGTGGAGAGTAAGGGAAGAACGACATATAACGAGGTTGCAGATGAACTTGTCGCAGAGTTTGCTGATCCTGGCAACAGTGTTGCATCGCCAGATCAGCAGCAACAGTACGACGAAAAAAATATTAGGCGGAGGGTATATGATGCCCTGAATGTCCTCATGGCAATGGATATTATATCAAAGGATAAGAAGGAGATACAATGGAAGGGTCTACCACGTACCAGCGTGAATGATATTGAAGAACTAAAGGCAGAGCGTCTTGGACTTCGAAATAGGATTGAAAAGAAAGCAGCATACTTGCAAGAGTTGGAGGAACAGTATGTAGGTCTTCAGAACCTAATACAGCGAAACGAACAATTATTCAGTTCGGAGAATGCCCCCAGTGGTGGCGTGTCTTTGCCTTTCATCCTGGTGCAGACGAGGCCTCATGCAACTGTTGAGATAGAAATTTCAGAAGATATGCAGCTGGTGCATTTTGATTTCAACAGTACTCCCTTTGAGCTCCATGATGACAATTATGTTTTGAAGGCGATGAAATTTTGCAACAGACCGCAATGCGATAATACAGCACAAAATTTTACTCCTGATGGTGGGGAGGGTTCTAGCATGTCAGGCATGTATCAACCACCCCATATGCCTATTCCTTCGTTGTCTAACACGCCGGTTAGAACACCAACCTCACCCCCACTTCCTGGAATCATAAAAGCTCGCGTCAAACACGAACATTAA 747 44.44 MLAVCEKVESKGRTTYNEVADELVAEFADPGNSVASPDQQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCNRPQCDNTAQNFTPDGGEGSSMSGMYQPPHMPIPSLSNTPVRTPTSPPLPGIIKARVKHEH 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15942813 15947824 + MELO3C019031.2.1 Cme07g01183 333199

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01183 248 Pfam E2F/DP family winged-helix DNA-binding domain 4 76 IPR003316 GO:0005667|GO:0006355
Cme07g01183 248 SUPERFAMILY E2F-DP heterodimerization region 83 196 IPR037241 -
Cme07g01183 248 SUPERFAMILY Winged helix DNA-binding domain 3 77 IPR036390 -
Cme07g01183 248 Pfam Transcription factor DP 84 191 IPR014889 -
Cme07g01183 248 SMART DP_2 83 246 IPR014889 -
Cme07g01183 248 Gene3D Transcription factor DP 82 204 IPR038168 -
Cme07g01183 248 PANTHER TRANSCRIPTION FACTOR DP 3 248 IPR015648 GO:0005667|GO:0051726
Cme07g01183 248 PIRSF Txn_factor_DP 2 248 IPR015648 GO:0005667|GO:0051726
Cme07g01183 248 SMART E2F_TDP_2 4 76 IPR003316 GO:0005667|GO:0006355
Cme07g01183 248 CDD DP_DD 81 184 IPR014889 -
Cme07g01183 248 Coils Coil 92 126 - -
Cme07g01183 248 Gene3D - 1 81 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01183 K04683 TFDP1; transcription factor Dp-1 - csv:101216863 489.189
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme12g01722 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.6 2.3e-105 379.4
Cme07g01183 . 4 185 E2F-DP Transcription Factor Family AT5G02470 56.0 7.1e-56 214.5
Cme05g00246 . 21 419 E2F-DP Transcription Factor Family AT2G36010 57.0 2.7e-116 416.0
Cme08g01161 . 21 439 E2F-DP Transcription Factor Family AT2G36010 53.2 2.2e-110 396.4
Cme05g00246 . 20 419 E2F-DP Transcription Factor Family AT5G22220 60.3 3.8e-112 402.1
Cme08g01161 . 11 431 E2F-DP Transcription Factor Family AT5G22220 50.2 4.0e-93 339.0
Cme07g01183 . 4 185 E2F-DP Transcription Factor Family AT5G02470 56.0 7.1e-56 214.5
Cme05g00246 . 20 419 E2F-DP Transcription Factor Family AT5G22220 60.3 3.8e-112 402.1
Cme08g01161 . 11 431 E2F-DP Transcription Factor Family AT5G22220 50.2 4.0e-93 339.0
Cme05g00246 . 21 419 E2F-DP Transcription Factor Family AT2G36010 57.0 2.7e-116 416.0
Cme08g01161 . 21 439 E2F-DP Transcription Factor Family AT2G36010 53.2 2.2e-110 396.4
Cme12g01722 . 3 376 E2F-DP Transcription Factor Family AT3G48160 56.6 2.3e-105 379.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41643 PF08781 DP 1.50E-41 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g01183 Cme_Chr07 FPKM 53.547298 55.469173 245.793823 239.689896 29.400425 33.0457 33.60976 62.091801 59.554058 57.559055