Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme07g01213 | ATGTCGTGGGCGGTGAGCGATGATGAGGAAGAAGCCCAGCTATTCGCCATGCAACTGGCTAGCGCATCGGTGCTTCCGATGGTGCTGAAGACGGCGATTGAGCTGGATTTGCTGGAGATCATTGGGAGAGGCGGGGAGGGGGCTCTGTTATCCCCGTCCCAAATCGCTTCCCAACTATCTGGGCTTAAAAACCCTGAGGCCCACGTGATGCTTGACCGCATGTTGCGCCTGCTGGCCAGCTACTCCATCCTCACTTGCTCTCTCAATCCCCTCCCCGATGGCTCCCTCCAGAGGCTTTACGGTCTCGCCCCTGTCTCCAAGTTCTTGATCAAGAATCAAGACGGCGTCTCTATTGCCCCTCTTTGTCTCATGAATCAAGACAAGGTCCTCATGGAGAGCTGGTACCATTTGAAAGATGCTGTGCTCGAAGGAGGGATTCCTTTCAACAGAGCCTACGGAATAAGTGCCTTCGAATACCACGGAACAGATCCCAGATTCAACAAGGTGTTTAACAAGGGAATGTCCGACCATTCCACCATTACCATGAAGAAGATTCTGGAGACCTACAAAGGGTTTGAAGGCCTTAATTCTGTGGTGGATGTCGGGGGAGGCACCGGAGCCGTACTCAACATGATTGTTTCCAAGTACCCCTCTATTAGAGGAATCAACTTCGACCTCCCTCATGTCATTCAGGATGCCCCTCCCTACCCAGGCGTGGAACATGTTGGGGGTGACATGTTTGTCAGCGTTCCAAAGGGGGATGCCATTTTCATGAAGTGGATCTGCCACGATTGGAGCGACCACCACTGCCTCAAATTCTTGAAGAATTGCTACGATGCGTTGCCGGAGCACGGCAAGGTGATTGTGGCTGAATGCATTCTTCCCGTAGCACCCGACGCCAGCCTCGCCACCAAAGGAGTCATTCACATCGACCTCATAATGCTGGCTCACAACCCCGGAGGCAAAGAAAGGACCGAGAAAGAGTTTCAAGCCTTGTCGAAAGCTGCTGGATTTCTTGGTTTTAAGGTCCACTGCTGTGCTTTTAACACTTATGTCATGGAATTTCTCAAGACACCTTAG | 1080 | 51.94 | MSWAVSDDEEEAQLFAMQLASASVLPMVLKTAIELDLLEIIGRGGEGALLSPSQIASQLSGLKNPEAHVMLDRMLRLLASYSILTCSLNPLPDGSLQRLYGLAPVSKFLIKNQDGVSIAPLCLMNQDKVLMESWYHLKDAVLEGGIPFNRAYGISAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKGFEGLNSVVDVGGGTGAVLNMIVSKYPSIRGINFDLPHVIQDAPPYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDHHCLKFLKNCYDALPEHGKVIVAECILPVAPDASLATKGVIHIDLIMLAHNPGGKERTEKEFQALSKAAGFLGFKVHCCAFNTYVMEFLKTP | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 16583356 | 16587480 | + | MELO3C024861.2.1 | Cme07g01213 | 333229 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme07g01213 | 359 | Pfam | O-methyltransferase domain | 134 | 338 | IPR001077 | GO:0008171 | |
| Cme07g01213 | 359 | PANTHER | BNAA10G07270D PROTEIN | 5 | 357 | - | - | |
| Cme07g01213 | 359 | SUPERFAMILY | Winged helix DNA-binding domain | 7 | 112 | IPR036390 | - | |
| Cme07g01213 | 359 | Pfam | Dimerisation domain | 27 | 79 | IPR012967 | GO:0046983 | |
| Cme07g01213 | 359 | Gene3D | - | 3 | 109 | IPR036388 | - | |
| Cme07g01213 | 359 | PANTHER | O-METHYLTRANSFERASE | 5 | 357 | IPR016461 | GO:0008168 | |
| Cme07g01213 | 359 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 114 | 355 | IPR029063 | - | |
| Cme07g01213 | 359 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 17 | 357 | IPR016461 | GO:0008168 | |
| Cme07g01213 | 359 | CDD | AdoMet_MTases | 198 | 289 | - | - | |
| Cme07g01213 | 359 | Gene3D | Vaccinia Virus protein VP39 | 110 | 357 | IPR029063 | - | |
| Cme07g01213 | 359 | PIRSF | O-mtase | 1 | 357 | IPR016461 | GO:0008168 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme04g02466 | Cme-Chr4:31193767 | Cme07g01213 | Cme-Chr7:16583356 | 3.08E-79 | dispersed | |
| Cme06g02743 | Cme-Chr6:34683514 | Cme07g01213 | Cme-Chr7:16583356 | 1.34E-16 | dispersed | |
| Cme06g02748 | Cme-Chr6:34734347 | Cme07g01213 | Cme-Chr7:16583356 | 6.38E-131 | dispersed | |
| Cme07g01213 | Cme-Chr7:16583356 | Cme11g01172 | Cme-Chr11:17829136 | 1.33E-68 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme07g01213 | K13066 | - | csv:101204109 | 712.99 |