Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01294 ATGGGCTCTAGGCACATTCACTCCATTGATACCACATGGTATGATGCTCATGCCACCTTCTATGGCGACATGTCCGGTTCCGACACTATGCAGGGAGCATGTGGGTATGGAAATCTATTCGAGCAAGGTTATGGGCTAGCAACAGCAGCATTAAGTACCGCATTGTTCAACAACGGTGGAACTTGCGGAGCATGCTTTGAGATAATGTGTGTGAACGATGAACACAAGTGGTGTATACCAAATGCAGGGACAATCAAAATAACGGCTACAAACTTTTGCCCACCAAACTACACAAAAACAGTTGACGTTTGGTGCAACCCGCCCCAACGTCATTTTGACCTATCTCTTTACATGTTCATCAAAATAGCTCCTTATAGGGCGGGGGTCATCCCAGTCCGCTACCGTAGAATGCGCTGCGAGAAACAAGGCGGTCTACGATTTGAGCTCAAAGGAAACCCCTATTGGCTTCTTGTTTTGATCTACAACGTTGGTGGTGCAGGTGATGTTGTTGATGTTAAGATTAAAGGCTCCTCTACAAGATGGCTTCAGATGTCAAGGAATTGGGGACAAAATTGGCAGGTTGGTACCTATCTTGTGGGGCAAGGTTTGTCCTTTAGAGTCACTACTAGTGATAGAAAGATCATTAAGTTTGATGATGTTGTGCCAAGCTATTGGCAATTTGGACAAAACTTTGAAGGAAACTCTAATTTCTAG 714 44.68 MGSRHIHSIDTTWYDAHATFYGDMSGSDTMQGACGYGNLFEQGYGLATAALSTALFNNGGTCGACFEIMCVNDEHKWCIPNAGTIKITATNFCPPNYTKTVDVWCNPPQRHFDLSLYMFIKIAPYRAGVIPVRYRRMRCEKQGGLRFELKGNPYWLLVLIYNVGGAGDVVDVKIKGSSTRWLQMSRNWGQNWQVGTYLVGQGLSFRVTTSDRKIIKFDDVVPSYWQFGQNFEGNSNF 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18161533 18162514 - MELO3C016062.2.1 Cme07g01294 333310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01294 237 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 154 233 IPR007117 -
Cme07g01294 237 PRINTS Expansin signature 43 57 IPR002963 GO:0009664
Cme07g01294 237 PRINTS Expansin signature 71 82 IPR002963 GO:0009664
Cme07g01294 237 PRINTS Expansin signature 85 95 IPR002963 GO:0009664
Cme07g01294 237 PRINTS Expansin signature 102 119 IPR002963 GO:0009664
Cme07g01294 237 PRINTS Expansin signature 119 132 IPR002963 GO:0009664
Cme07g01294 237 PRINTS Expansin signature 143 155 IPR002963 GO:0009664
Cme07g01294 237 PRINTS Expansin signature 155 176 IPR002963 GO:0009664
Cme07g01294 237 PRINTS Expansin signature 190 211 IPR002963 GO:0009664
Cme07g01294 237 PRINTS Expansin signature 219 235 IPR002963 GO:0009664
Cme07g01294 237 PRINTS Expansin/Lol pI family signature 12 27 IPR007118 GO:0005576
Cme07g01294 237 PRINTS Expansin/Lol pI family signature 30 48 IPR007118 GO:0005576
Cme07g01294 237 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Cme07g01294 237 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576
Cme07g01294 237 PRINTS Expansin/Lol pI family signature 181 195 IPR007118 GO:0005576
Cme07g01294 237 PRINTS Expansin/Lol pI family signature 219 233 IPR007118 GO:0005576
Cme07g01294 237 SMART dpbb_1 48 134 IPR007112 -
Cme07g01294 237 PANTHER EXPANSIN-A21-RELATED 11 237 - -
Cme07g01294 237 Pfam Lytic transglycolase 48 134 IPR009009 -
Cme07g01294 237 SUPERFAMILY Barwin-like endoglucanases 12 162 IPR036908 -
Cme07g01294 237 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 31 144 IPR007112 -
Cme07g01294 237 Pfam Expansin C-terminal domain 146 222 IPR007117 -
Cme07g01294 237 Gene3D - 144 237 IPR036749 -
Cme07g01294 237 PANTHER EXPANSIN-A15 11 237 IPR002963 GO:0009664
Cme07g01294 237 SUPERFAMILY PHL pollen allergen 141 232 IPR036749 -
Cme07g01294 237 Gene3D - 2 140 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01294 Cme-Chr7:18161533 Cme11g01811 Cme-Chr11:26286236 3.67E-147 dispersed
Cme07g01294 Cme-Chr7:18161533 Cme08g02411 Cme-Chr8:30997262 5.24E-101 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01294 - - csv:101207961 470.7