Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01338 ATGGATTGCCACTTTACTCGGATGCCATACATTCACATGAGATTATTAGGTACAACATTTACAGTTAAGCTTGCCCCGAATCCTGCCCTCTGGAAGATTTCTTATTACCCAGTAGCCAATATCAATTTTCCATCTAATGCTACGCCAATTAATCATCAGATGTCTATAATAAGGAGTGATTCACTATTTTCTCCTTTCAATGTCTTCAACAGAACGAGTTCTTCACAAGCCTTCCTGTTTATGGTTGATGAGGGTAGAAATTCCCACTTTGGTGAGTGCTACAAGTCTAAATGTTCCTCATGTTCTATTGAGAAGCAGGTTTTGAGCAACAAAGATGATTCCCCAGAAAATCTTGAGACTGAAAATGACAACGAATGGCAAAGACGAAAAAAGATAGGACTTGCAAATAAAGGGCGAGTGCCATGGAACAAGGGCAAGAAACACAACCTGGAAACTCGTAAACGAATCAAGCAGAGAACAATTGAAGCCTTGAGAGACCCTGAGGTGAGAAGGAAGATGTCCGAATATCCCCGCACTCACAGTGATCAGGTCAAGGTTAAAATTAGCTCTTCACTCAGACGTGTTTGGGGAAAGAGACTATTGAAGAAGAGATTAAATGAGACATTCTTTCTATCGTGGATGGAAAGCATTGCTGTTGCTGCAAAGAAAGGAGGGAAGGAAGAACAAGAACTCGACTGGGACAGCTACGACAAGATAAAACAAGAAACACTTCACCAAGAGCTTCAACGGGTTGCAGAGAAGGAAAAATTAAAAGCGATGAGAGCAGAGAATGCAAAAATGAGAGAAGTCCAAAGGAGGGTTCGTAAGAAAGAAAAAGGGGATGACTATGCCAAAACAAAGAAGTTGAAAATGTGTTCCAGAAGAAGAGATGCGGGGAAAAGAAAGGGAAAAGAAGAAGATGACAACTTGAGAAAGATGAAGAAATCGACTACCATTGAAAGATCAAAGCTTAAGCAGAGATTGAAAAAGATTCGCAAAAAGATTTCCATAAATGGTGCAGTCACTACTCAAGGAAGTATAGCATCAGTGGCACCGCAAAACACATCCTGGGAAACACTGGATCTGGATCTTATAAAGAAAGGTCAAATGAGAAAAGAAGCATCACTGGCAGATCAAATTCAAGTTGCTAAGAATAGAAAAGCTGAATCTACAGCCTGCAAAGTTCTTATAGCAGCCTCTACTTTGGCATTCCAGTGCACCGGGGTTGCGGAAAGATAA 1239 40.76 MDCHFTRMPYIHMRLLGTTFTVKLAPNPALWKISYYPVANINFPSNATPINHQMSIIRSDSLFSPFNVFNRTSSSQAFLFMVDEGRNSHFGECYKSKCSSCSIEKQVLSNKDDSPENLETENDNEWQRRKKIGLANKGRVPWNKGKKHNLETRKRIKQRTIEALRDPEVRRKMSEYPRTHSDQVKVKISSSLRRVWGKRLLKKRLNETFFLSWMESIAVAAKKGGKEEQELDWDSYDKIKQETLHQELQRVAEKEKLKAMRAENAKMREVQRRVRKKEKGDDYAKTKKLKMCSRRRDAGKRKGKEEDDNLRKMKKSTTIERSKLKQRLKKIRKKISINGAVTTQGSIASVAPQNTSWETLDLDLIKKGQMRKEASLADQIQVAKNRKAESTACKVLIAASTLAFQCTGVAER 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18838394 18843128 + MELO3C016104.2.1 Cme07g01338 333354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01338 412 Pfam NUMOD3 motif 129 156 IPR003611 GO:0003677
Cme07g01338 412 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC-LIKE PROTEIN 13 399 - -
Cme07g01338 412 Coils Coil 245 270 - -
Cme07g01338 412 MobiDBLite consensus disorder prediction 298 315 - -
Cme07g01338 412 PANTHER NUMOD3 MOTIF FAMILY PROTEIN, EXPRESSED 13 399 - -
Cme07g01338 412 MobiDBLite consensus disorder prediction 266 315 - -
Cme07g01338 412 MobiDBLite consensus disorder prediction 266 288 - -
Cme07g01338 412 Coils Coil 314 334 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01338 - - - csv:101207813 744.962
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01516 Cme-Chr4:21761885 Cme07g01338 Cme-Chr7:18838394 2.58E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g130 . . . . . . . . . Cmo04g00608 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1030 Cone15ag1015 . . . . Blo07g00963 . Bda05g00786 . . . . . . . . Cma04g00568 . Car04g00539 . . Cpe01g00514 . . . . . . . Cla07g00954 Cam07g1028 Cec07g1098 Cco07g1077 Clacu07g0997 Cmu07g0993 Cre07g1368 . . Chy07g00967 Cme07g01338
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010897 2 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g01338 Cme_Chr07 FPKM 6.632422 9.799074 8.977121 11.17202 12.329144 12.396769 12.809529 13.518853 13.236832 14.148471