Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01343 ATGAAGAAAAAGATAGACTTCATGTTTCTGACAAACAACTCACTGAGTGGTGAAGTGCCCGGTTGGATCTTGAGGAGCAAAAAGAACATAGATTTGTCTTACAACAATTTTTCGGGGTCCACTCTTGCTAGTTGCCAACAATCACCTGTGAACTTGATTGCAAGTTACCCACCCGCCACAAATCATCAAGTTCCTTGGTGCCTCAAGAAAGACCTTCCATGCTCGGGAGAAGCTGAATACCATTCCCTGTTTATTAACTGTGGAGGAACTAGAGTGACGGCTGATGGGCATGATTTTGAAGAGGACTTAACTACAGAAGGCAAATCAAATTTCTTTTCTGTTTCAGAAAAATGGGCTTATAGCAGTACAGGAGTTTTTTTGGGTGATGAAAATGCTGACTATTTAGCTACAAATAAGTTCGGCCTGAATGTGAGTGGTCCACGCTATTATCAAAATGCCCGACTTTCCCCTCTCTCCCTAAAATATTATGGCCTTTGCCTGCGAAGCGGAAGCTACAATGTGAAGCTCCACTTTGCTGAAATTATGTACTCTAATGATCAAACTTTTAGCAGCCTGGGAAAGCGTATATTTGATATATCAATTCAAGGAAAACTAGTGAAGAAGGATTTCAATATTATGGAGGCAGCTGGGGGAGTTGGTAAGAACTTCACAGTGGAAGATAAAAATGTTCTTGTCAATGGCAGTACTCTTGAGATTCATCTATATTGGGCTGGTAAAGGAACCACAGCTGTGCCAGACAGAGGAGTTTATGGTCCCCTTATTTCTGCTATCACAGTTACACCAAACTTTAAAATCAATGAGGGAGGACTATCATCTGGAGCACTTGCCGGCATCATAATAGCTTCATGTGTAGTAGTTATCATATTGGTCCTAGTATTTCTTTGGGTGAAAGGTTACATATTTAAGAAGGAAAACCTAGATAATGAACTTTCTGGCATAGATTTACAAACGGGTCATTTTACCTTGAAACAAATTAAAGCTGCCACCAACAATTTTGATCCTAAAAGTAAAATAGGCGAAGGTGGATTTGGGCCTGTCTACAAGGGTGTATTATCAGATGGTGCTTTGATTGCCGTGAAGCAACTCTCCTCGAAATCGAAGCAAGGGAGCCGTGAGTTTGTTACTGAGATTGGCATGATATCTGCATTGCAACACCCAAACCTTGTTAAGCTCTATGGCTGCTGCGTTGAGGGAAACCAATTGTTGCTTGTATATGAATATATGGAAAACAATAGCCTTGCTCGTGCACTTTTCGGTCGAGAGGAACAGCGGCTACACCTTGACTGGCGAACAAGGAAGAAGATATGCTTGGAGATAGCTAGGGGATTAGCTTACCTTCATGAAGAATCAAGGTTGAAAATTGTTCATAGAGACATAAAGGCCACAAATGTGCTGCTCGATAAAGATCTTAACGCTAAGATTTCTGATTTTGGTTTGGCTAAGCTTGATGAAGAGGAAAACACCCACATCAGTACACGAATTGCTGGAACCATTGGTTATATGGCCCCTGAGTATGCAATGAGAGGATACTTGACCGACAAGGCAGATGTTTACAGCTTTGGAATAGTTGCCTTAGAGATAGTTAGCGGGAAAAGTAACACAAATTACCGGCCGAAAGAAGAGTTTGTTTATCTTCTTGATTGGGCCTATGTATTGGAAGAGCAAGGTAACCTTCTAGAACTAGTAGATCCAGACCTTGGTTCAAATTACTCATCAGAGGAAGCAATGAGGATGCTGAACGTAGCTCTCTTATGCACCAACCCATCTCCAACTCTCAGACCAGCCATGTCTTCTGTGGTGAGTATGCTTGAAGGTAAGATTGCAGTCCAAGCACCGATCATCAAGCGCACTTCTTCCGGCCAAGATCCAAGGTTTAGAGCCTTCGAGAAGCTCTCACACGACAGTCGATCACAGATTTCAAGCTCAACCGCATCTGATGCTGAGCCTCAAAAAAGTATGTTAATGGATGGGCCATGTCCTGATTCTTCAGTGTCTATTGATACCAATGGCAATAATCACTACCATTCTGCATCGCGTGATCCCGTTGAGAATCATCGTCGTGTGGATAATTTGAAGGAGTCACCTAATTAA 2112 42.14 MKKKIDFMFLTNNSLSGEVPGWILRSKKNIDLSYNNFSGSTLASCQQSPVNLIASYPPATNHQVPWCLKKDLPCSGEAEYHSLFINCGGTRVTADGHDFEEDLTTEGKSNFFSVSEKWAYSSTGVFLGDENADYLATNKFGLNVSGPRYYQNARLSPLSLKYYGLCLRSGSYNVKLHFAEIMYSNDQTFSSLGKRIFDISIQGKLVKKDFNIMEAAGGVGKNFTVEDKNVLVNGSTLEIHLYWAGKGTTAVPDRGVYGPLISAITVTPNFKINEGGLSSGALAGIIIASCVVVIILVLVFLWVKGYIFKKENLDNELSGIDLQTGHFTLKQIKAATNNFDPKSKIGEGGFGPVYKGVLSDGALIAVKQLSSKSKQGSREFVTEIGMISALQHPNLVKLYGCCVEGNQLLLVYEYMENNSLARALFGREEQRLHLDWRTRKKICLEIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLEEQGNLLELVDPDLGSNYSSEEAMRMLNVALLCTNPSPTLRPAMSSVVSMLEGKIAVQAPIIKRTSSGQDPRFRAFEKLSHDSRSQISSSTASDAEPQKSMLMDGPCPDSSVSIDTNGNNHYHSASRDPVENHRRVDNLKESPN 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18904904 18909650 - MELO3C016108.2.1 Cme07g01343 333359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01343 703 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 52 671 - -
Cme07g01343 703 Gene3D Phosphorylase Kinase; domain 1 306 414 - -
Cme07g01343 703 ProSiteProfiles Protein kinase domain profile. 339 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01343 703 CDD STKc_IRAK 345 612 - -
Cme07g01343 703 Pfam Protein tyrosine and serine/threonine kinase 342 608 IPR001245 GO:0004672|GO:0006468
Cme07g01343 703 SMART serkin_6 339 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01343 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Cme07g01343 703 PANTHER - 52 671 - -
Cme07g01343 703 MobiDBLite consensus disorder prediction 641 656 - -
Cme07g01343 703 MobiDBLite consensus disorder prediction 637 703 - -
Cme07g01343 703 Pfam Malectin domain 83 264 IPR021720 -
Cme07g01343 703 Gene3D Transferase(Phosphotransferase) domain 1 415 622 - -
Cme07g01343 703 MobiDBLite consensus disorder prediction 669 684 - -
Cme07g01343 703 Gene3D - 80 269 - -
Cme07g01343 703 SUPERFAMILY Protein kinase-like (PK-like) 322 624 IPR011009 -
Cme07g01343 703 MobiDBLite consensus disorder prediction 685 703 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00509 Cme-Chr7:4206076 Cme07g01343 Cme-Chr7:18904904 0 dispersed
Cme07g00514 Cme-Chr7:4331718 Cme07g01343 Cme-Chr7:18904904 6.29E-93 dispersed
Cme07g01343 Cme-Chr7:18904904 Cme12g01256 Cme-Chr12:20676044 0 dispersed
Cme12g01365 Cme-Chr12:21574748 Cme07g01343 Cme-Chr7:18904904 1.28E-103 dispersed
Cme07g01343 Cme-Chr7:18904904 Cme07g00504 Cme-Chr7:4173782 4.33E-125 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65016 PF07714 PK_Tyr_Ser-Thr 1.30E-49 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01343 - - csv:101211151 1351.27