Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01351 ATGAAGATTCAGTGCAACGTCTGTGAGATGGCTGAAGCCACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCCTGTGATGAGAAGATTCATGCGGCCAACAAGCTTGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCATCTCAGATGCCTAAATGCGACATCTGTCAGGAAGCTAGTGGATATATCTTCTGTTTAGAGGATCGGGCGTTACTTTGCAGGAAGTGTGATGTTGCCATACACACGGCAAATACTTATGTAACTGGTCACCAACGCTTTCTGCTTACTGGTGTGAAAGTGGCACTTGAGCCTACCGATCCTGTTGCTTGTTCTTCCATGGCTAAGTCACATTCTCGAGAGAAGTCTACTGAAACTAAAGTTAGACCACCATCTGAAAGGGAATTCTCGATGCCTTCTCCTACTGAACTCAGCAGAAGCCTGTCTGTACTAGGTGGATCTGAGGACTTTATGGAAAATAGAACGTTGCTTACCGGAAGCGGGGATTCTGGTTCTGGTGGCTTTTCACAGTGGCAAATGGATGAACTTATTAGTCTTACCGGATTCAATCAGAACTATGGGTATATGGACAACGGATCATCCAAGGCTGATAGTGGAAAGCTTGGGGATTCTGATTCATCACCAGTTTTGAGAGCTGCTGACATTGAACTGGACGATGACGATGAATGTTCGGGTCAGGTTCCAGAAGCTTCCTGGACTGTGCCTCAGATTCCCTCTCCGCCTACAGCATCAGGCTTATACTGGCCAAGGAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTGTTCTTCAGAAAAGGTTCAACATTGCTCACGTAATGGTACATTTTCGAAACGAAGAAGACAGTTCTAG 894 46.53 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACSSMAKSHSREKSTETKVRPPSEREFSMPSPTELSRSLSVLGGSEDFMENRTLLTGSGDSGSGGFSQWQMDELISLTGFNQNYGYMDNGSSKADSGKLGDSDSSPVLRAADIELDDDDECSGQVPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDICSSEKVQHCSRNGTFSKRRRQF 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19039927 19042941 - MELO3C016115.2.1 Cme07g01351 333367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01351 297 MobiDBLite consensus disorder prediction 121 135 - -
Cme07g01351 297 SMART bboxneu5 52 99 IPR000315 GO:0008270
Cme07g01351 297 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cme07g01351 297 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Cme07g01351 297 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Cme07g01351 297 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Cme07g01351 297 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cme07g01351 297 Gene3D Classic Zinc Finger 1 92 - -
Cme07g01351 297 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 296 - -
Cme07g01351 297 MobiDBLite consensus disorder prediction 115 148 - -
Cme07g01351 297 CDD Bbox1_BBX-like 5 47 - -
Cme07g01351 297 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 296 - -
Cme07g01351 297 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01353 Cme-Chr1:16917918 Cme07g01351 Cme-Chr7:19039927 1.75E-35 dispersed
Cme07g01351 Cme-Chr7:19039927 Cme11g02456 Cme-Chr11:31278052 1.56E-44 dispersed
Cme07g01351 Cme-Chr7:19039927 Cme03g01907 Cme-Chr3:27183411 1.82E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41647 PF00643 zf-B_box 3.60E-07 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01351 - - csv:101209756 588.571