Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01351 ATGAAGATTCAGTGCAACGTCTGTGAGATGGCTGAAGCCACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCCTGTGATGAGAAGATTCATGCGGCCAACAAGCTTGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCATCTCAGATGCCTAAATGCGACATCTGTCAGGAAGCTAGTGGATATATCTTCTGTTTAGAGGATCGGGCGTTACTTTGCAGGAAGTGTGATGTTGCCATACACACGGCAAATACTTATGTAACTGGTCACCAACGCTTTCTGCTTACTGGTGTGAAAGTGGCACTTGAGCCTACCGATCCTGTTGCTTGTTCTTCCATGGCTAAGTCACATTCTCGAGAGAAGTCTACTGAAACTAAAGTTAGACCACCATCTGAAAGGGAATTCTCGATGCCTTCTCCTACTGAACTCAGCAGAAGCCTGTCTGTACTAGGTGGATCTGAGGACTTTATGGAAAATAGAACGTTGCTTACCGGAAGCGGGGATTCTGGTTCTGGTGGCTTTTCACAGTGGCAAATGGATGAACTTATTAGTCTTACCGGATTCAATCAGAACTATGGGTATATGGACAACGGATCATCCAAGGCTGATAGTGGAAAGCTTGGGGATTCTGATTCATCACCAGTTTTGAGAGCTGCTGACATTGAACTGGACGATGACGATGAATGTTCGGGTCAGGTTCCAGAAGCTTCCTGGACTGTGCCTCAGATTCCCTCTCCGCCTACAGCATCAGGCTTATACTGGCCAAGGAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTGTTCTTCAGAAAAGGTTCAACATTGCTCACGTAATGGTACATTTTCGAAACGAAGAAGACAGTTCTAG 894 46.53 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACSSMAKSHSREKSTETKVRPPSEREFSMPSPTELSRSLSVLGGSEDFMENRTLLTGSGDSGSGGFSQWQMDELISLTGFNQNYGYMDNGSSKADSGKLGDSDSSPVLRAADIELDDDDECSGQVPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDICSSEKVQHCSRNGTFSKRRRQF 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19039927 19042941 - MELO3C016115.2.1 Cme07g01351 333367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01351 297 MobiDBLite consensus disorder prediction 121 135 - -
Cme07g01351 297 SMART bboxneu5 52 99 IPR000315 GO:0008270
Cme07g01351 297 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cme07g01351 297 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Cme07g01351 297 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Cme07g01351 297 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Cme07g01351 297 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cme07g01351 297 Gene3D Classic Zinc Finger 1 92 - -
Cme07g01351 297 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 296 - -
Cme07g01351 297 MobiDBLite consensus disorder prediction 115 148 - -
Cme07g01351 297 CDD Bbox1_BBX-like 5 47 - -
Cme07g01351 297 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 296 - -
Cme07g01351 297 CDD Bbox1_BBX-like 56 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01351 - - - csv:101209756 588.571
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01353 Cme-Chr1:16917918 Cme07g01351 Cme-Chr7:19039927 1.75E-35 dispersed
Cme07g01351 Cme-Chr7:19039927 Cme11g02456 Cme-Chr11:31278052 1.56E-44 dispersed
Cme07g01351 Cme-Chr7:19039927 Cme03g01907 Cme-Chr3:27183411 1.82E-36 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01557 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.9 1.4e-82 303.5
Cme02g01521 . 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 50.3 1.4e-56 217.2
Cme02g01521 . 5 375 C2C2-CO-like Transcription Factor Family AT5G57660 52.4 3.6e-70 262.3
Cme02g01520 CCT 15 364 C2C2-CO-like Transcription Factor Family AT5G57660 51.9 6.1e-62 235.0
Cme03g01557 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 50.1 2.3e-53 206.5
Cme01g00573 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 8.1e-89 324.3
Cme11g00980 . 1 425 C2C2-CO-like Transcription Factor Family AT3G07650 53.8 1.2e-87 320.5
Cme01g00573 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 2.2e-86 316.2
Cme11g00980 . 1 425 C2C2-CO-like Transcription Factor Family AT5G48250 53.7 1.1e-85 313.9
Cme01g00573 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 2.2e-86 316.2
Cme11g00980 . 1 425 C2C2-CO-like Transcription Factor Family AT5G48250 53.7 1.1e-85 313.9
Cme03g01907 . 1 209 C2C2-CO-like Transcription Factor Family AT1G75540 51.7 2.0e-54 209.9
Cme01g01353 CCT,ECH 1 207 C2C2-CO-like Transcription Factor Family AT1G75540 54.0 2.8e-48 189.5
Cme11g00162 CCT,ECH 1 171 C2C2-CO-like Transcription Factor Family AT1G75540 54.5 3.7e-45 179.1
Cme07g01351 . 1 297 C2C2-CO-like Transcription Factor Family AT1G78600 51.1 5.5e-78 288.1
Cme08g00909 . 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 81.7 3.8e-49 191.4
Cme08g00909 . 1 136 C2C2-CO-like Transcription Factor Family AT4G38960 70.3 3.6e-50 194.9
Cme01g01353 CCT,ECH 1 205 C2C2-CO-like Transcription Factor Family AT4G39070 54.0 4.4e-51 198.4
Cme03g01907 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.4 1.9e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41647 PF00643 zf-B_box 3.60E-07 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g01351 Cme_Chr07 FPKM 1.618758 1.516588 18.348736 16.737267 16.070097 18.259781 17.951754 8.434946 8.68964 9.75104