Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01358 ATGACGTCGGGGACTCGGCTACCGACGTGGAGGGAGCGGGAGAACAACAAAAGAAGGGAGAGAAGGAGAAGAGCTATTGCGGCAAAGATCTTTGCTGGACTCAGGATGTACGGGAACTACAAGCTTCCCAAACATTGCGACAACAACGAGGTCCTTAAAGCTCTCTGCAATGAGGCGGGATGGACCGTTGAACCTGATGGCACCACTTACCGTAAGGGATGCAAGCCAATTGAACGTATGGATGTGGTTGGTGGATCGGCAGCTGCAAGCCCGTACACATCTCACCAACCAAGTCCTTGTGCTTCCTTCAATCCAAGCCCCGGTTCATCTTCTTTTCCTAGTCCAGCATCATCCTCATATGTCGGTAATCCAAATACCGATGGAAGTTCACTTATCCCCTGGCTGAAAAACCTTTCAACGTCATCATCTTCGGCATCCTCGTCTAAACTCCCAAATCATTATATTCATGGAGGTTCCATCAGTGCTCCTGTTACTCCTCCTCTAAGTTCCCCAACTGCTAGAACACCCCGACTCAAAGCTGACTGGGAAGACCAATCTGTCTTACCAGGATGGAGTGCACAATACTATTCCTCCCAGCCATCTTCCACTCCACCAAGTCCTGGGCGTCAGATTGTTCCCACTCCAGAATGGTTTGCTGGCCTTAGAATTCCTCAGGGTGGACCCAATTCTCCAACATTTAGTCTTGTCTCCACAAACCCATTTGGTTTCAAAGAAGCAGCAATCACTGGTGGAGGATCTCGCATGTGGACCCCTGGTCAAAGTGGGACCTGCTCTCCTGCCATTGCAGCGGGCTCTGATCACACTGCAGATATTCCAATGTCAGAAGTGATCTCTGATGAGTTCGCCTTTGGAAGCAATGCAGCAGGTCTAGTGAAGCCATGGGAAGGAGAAATAATTCATGAGGAATGTGGTTCAGATGACTTAGAGCTCACTCTTGGCAACTCAAGGACCAGGTAA 978 49.59 MTSGTRLPTWRERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPIERMDVVGGSAAASPYTSHQPSPCASFNPSPGSSSFPSPASSSYVGNPNTDGSSLIPWLKNLSTSSSSASSSKLPNHYIHGGSISAPVTPPLSSPTARTPRLKADWEDQSVLPGWSAQYYSSQPSSTPPSPGRQIVPTPEWFAGLRIPQGGPNSPTFSLVSTNPFGFKEAAITGGGSRMWTPGQSGTCSPAIAAGSDHTADIPMSEVISDEFAFGSNAAGLVKPWEGEIIHEECGSDDLELTLGNSRTR 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19092023 19096019 - MELO3C016121.2.1 Cme07g01358 333374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01358 325 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 325 - -
Cme07g01358 325 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 139 IPR008540 -
Cme07g01358 325 MobiDBLite consensus disorder prediction 87 123 - -
Cme07g01358 325 MobiDBLite consensus disorder prediction 1 20 - -
Cme07g01358 325 MobiDBLite consensus disorder prediction 89 123 - -
Cme07g01358 325 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 325 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cme07g01358 325 MobiDBLite consensus disorder prediction 193 212 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01358 - - - csv:101210002 603.208
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01358 Cme-Chr7:19092023 Cme12g01261 Cme-Chr12:20706393 2.88E-133 dispersed
Cme07g01358 Cme-Chr7:19092023 Cme03g01975 Cme-Chr3:27612904 1.89E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g79 . . . . Bpe09g00267 . . Bma13g00924 Cmo16g00479 Cmo04g00712 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00726 Bda05g00812 . . Bpe03g00874 . . . . . Cma04g00664 Cma16g00445 . . Cpe14g00374 Cpe01g00599 . . . . . . . Cla07g00969 Cam07g1042 Cec07g1113 Cco07g1090 Clacu07g1014 Cmu07g1007 Cre07g1384 . . Chy07g00983 Cme07g01358
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01975 . 35 344 BZR Transcription Factor Family AT1G75080 60.0 3.6e-88 322.0
Cme08g00821 . 28 319 BZR Transcription Factor Family AT1G75080 58.9 1.1e-79 293.9
Cme03g01975 . 35 345 BZR Transcription Factor Family AT1G19350 60.0 1.0e-87 320.5
Cme08g00821 . 28 317 BZR Transcription Factor Family AT1G19350 59.2 3.7e-77 285.4
Cme08g00821 . 6 319 BZR Transcription Factor Family AT3G50750 57.7 2.4e-77 285.8
Cme03g01975 . 35 344 BZR Transcription Factor Family AT3G50750 52.1 2.8e-62 235.7
Cme07g01358 . 77 325 BZR Transcription Factor Family AT4G18890 54.9 6.0e-49 191.0
Cme12g01261 . 118 365 BZR Transcription Factor Family AT4G18890 51.0 2.1e-46 182.6
Cme07g01358 . 1 325 BZR Transcription Factor Family AT1G78700 72.8 3.0e-116 415.2
Cme12g01261 . 39 365 BZR Transcription Factor Family AT1G78700 67.8 2.5e-102 369.0
Cme08g00821 . 28 200 BZR Transcription Factor Family AT4G36780 79.1 3.8e-64 241.9
Cme03g01975 . 67 238 BZR Transcription Factor Family AT4G36780 62.1 7.4e-44 174.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41648 PF05687 BES1_N 5.90E-66 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme07g01358 Cme_Chr07 FPKM 11.215229 11.421937 18.614044 21.350142 10.278894 11.418778 11.18611 12.533632 12.87838 13.954942