Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01358 ATGACGTCGGGGACTCGGCTACCGACGTGGAGGGAGCGGGAGAACAACAAAAGAAGGGAGAGAAGGAGAAGAGCTATTGCGGCAAAGATCTTTGCTGGACTCAGGATGTACGGGAACTACAAGCTTCCCAAACATTGCGACAACAACGAGGTCCTTAAAGCTCTCTGCAATGAGGCGGGATGGACCGTTGAACCTGATGGCACCACTTACCGTAAGGGATGCAAGCCAATTGAACGTATGGATGTGGTTGGTGGATCGGCAGCTGCAAGCCCGTACACATCTCACCAACCAAGTCCTTGTGCTTCCTTCAATCCAAGCCCCGGTTCATCTTCTTTTCCTAGTCCAGCATCATCCTCATATGTCGGTAATCCAAATACCGATGGAAGTTCACTTATCCCCTGGCTGAAAAACCTTTCAACGTCATCATCTTCGGCATCCTCGTCTAAACTCCCAAATCATTATATTCATGGAGGTTCCATCAGTGCTCCTGTTACTCCTCCTCTAAGTTCCCCAACTGCTAGAACACCCCGACTCAAAGCTGACTGGGAAGACCAATCTGTCTTACCAGGATGGAGTGCACAATACTATTCCTCCCAGCCATCTTCCACTCCACCAAGTCCTGGGCGTCAGATTGTTCCCACTCCAGAATGGTTTGCTGGCCTTAGAATTCCTCAGGGTGGACCCAATTCTCCAACATTTAGTCTTGTCTCCACAAACCCATTTGGTTTCAAAGAAGCAGCAATCACTGGTGGAGGATCTCGCATGTGGACCCCTGGTCAAAGTGGGACCTGCTCTCCTGCCATTGCAGCGGGCTCTGATCACACTGCAGATATTCCAATGTCAGAAGTGATCTCTGATGAGTTCGCCTTTGGAAGCAATGCAGCAGGTCTAGTGAAGCCATGGGAAGGAGAAATAATTCATGAGGAATGTGGTTCAGATGACTTAGAGCTCACTCTTGGCAACTCAAGGACCAGGTAA 978 49.59 MTSGTRLPTWRERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPIERMDVVGGSAAASPYTSHQPSPCASFNPSPGSSSFPSPASSSYVGNPNTDGSSLIPWLKNLSTSSSSASSSKLPNHYIHGGSISAPVTPPLSSPTARTPRLKADWEDQSVLPGWSAQYYSSQPSSTPPSPGRQIVPTPEWFAGLRIPQGGPNSPTFSLVSTNPFGFKEAAITGGGSRMWTPGQSGTCSPAIAAGSDHTADIPMSEVISDEFAFGSNAAGLVKPWEGEIIHEECGSDDLELTLGNSRTR 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19092023 19096019 - MELO3C016121.2.1 Cme07g01358 333374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01358 325 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 325 - -
Cme07g01358 325 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 139 IPR008540 -
Cme07g01358 325 MobiDBLite consensus disorder prediction 87 123 - -
Cme07g01358 325 MobiDBLite consensus disorder prediction 1 20 - -
Cme07g01358 325 MobiDBLite consensus disorder prediction 89 123 - -
Cme07g01358 325 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 325 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cme07g01358 325 MobiDBLite consensus disorder prediction 193 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01358 Cme-Chr7:19092023 Cme12g01261 Cme-Chr12:20706393 2.88E-133 dispersed
Cme07g01358 Cme-Chr7:19092023 Cme03g01975 Cme-Chr3:27612904 1.89E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41648 PF05687 BES1_N 5.90E-66 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01358 - - csv:101210002 603.208