Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01369 ATGTCTCTTCGCCGATCCTTTCTCTCTCGGAGGTTCTCTTCCAAGTCTTCCTCTAGAGGAGATCTCAATGCTCTTCCTGGAATTCCTCCCCTCTCCCCCTCCTCCGACTTTGATCATTCCTCCCCTCTCTCTGGAGGCTCTCATCCTCAATCCTCCTCTTGGTCTTCCATGCTTCCCGAGCTTCTTCGGGAGATCATTCAGCGGGTTGAGGCTGAAGAACATGGTTGGCCTAATCGCCAGAACGTTGTTTCTTGTGCTTGTGTTTGTAAACGTTGGCGGGATATTACTAAAGAGGTCGCCAGGGCCACACCTCATTCCGGCAAAATTACTTTCCCTTCTTGTCTCAAACAGCCTGGACCAAGTGATCTTCCACATCAGTGTCTCATAAAAAGGAATAAGAAGACTTCAACATTTTCCCTTTATCTTGCCCTTACACCATCATTTACAGATAAGGGAAAGTTCCTCTTAGCCGCACGGAGATATAGGCATGGAGCTCATACTGAGTATATCATATCCCTTGATGCTGAAGACTTATCCCAAGGAAGCAATGCTTATGTGGGGAAGTTAAGCTCCGATTTTCTTGGCACAAATTTTACCATTTATGACAGCCAACCACCACATAACGGTGCAAAGCCATCGAGCAGTAAATCAAGCCGCCGGTTTGCAAGCAAGCAAATTAGCCCACAAGTGTCAGCAGGTAACTTTGAGGTTGGGCAAGTCTCTTACAAATTTAATCTTTTGAAGTCAAGAGGCCCAAGGCGAATGATATGCTCTCTAAAGTGCCCAGTATCAGAAGACAATGGAAGCAACAAACCTAGTGAGAACTCAAAGATGAAGAAATCTGAGTCTCTTTCTTCCTCATCTGGGTTGACAATCTTAAGAAACAAGGCACCTCGGTGGCACGAGCACCTGCAATGCTGGTGCTTGAATTTTCACGGTCGGGTTACTGTAGCATCTGTTAAGAACTTTCAACTTGTTGCTACTGTTGACCATACCCAGCCAGGAGGTAAAGGGGACGAAGAAACAGTTCTACTACAGTTTGGAAAGGTAGGCGACGATACATTCACTATGGATTATAGGCAGCCATTATCAGCTTTCCAGGCTTTCGCCATTTGCCTTACTAGCTTTGGCACTAAGCTGGCGTGCGAATAG 1152 46.18 MSLRRSFLSRRFSSKSSSRGDLNALPGIPPLSPSSDFDHSSPLSGGSHPQSSSWSSMLPELLREIIQRVEAEEHGWPNRQNVVSCACVCKRWRDITKEVARATPHSGKITFPSCLKQPGPSDLPHQCLIKRNKKTSTFSLYLALTPSFTDKGKFLLAARRYRHGAHTEYIISLDAEDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSKSSRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMICSLKCPVSEDNGSNKPSENSKMKKSESLSSSSGLTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDHTQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19237423 19241332 - MELO3C016130.2.1 Cme07g01369 333385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01369 383 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 383 - -
Cme07g01369 383 SUPERFAMILY F-box domain 48 97 IPR036047 GO:0005515
Cme07g01369 383 Pfam Tub family 115 378 IPR000007 -
Cme07g01369 383 SUPERFAMILY Tubby C-terminal domain-like 105 383 IPR025659 -
Cme07g01369 383 PANTHER TUBBY-RELATED 1 383 - -
Cme07g01369 383 MobiDBLite consensus disorder prediction 34 54 - -
Cme07g01369 383 ProSitePatterns Tub family signature 1. 311 324 IPR018066 -
Cme07g01369 383 Gene3D Tubby Protein; Chain A 110 383 IPR025659 -
Cme07g01369 383 MobiDBLite consensus disorder prediction 262 287 - -
Cme07g01369 383 MobiDBLite consensus disorder prediction 1 21 - -
Cme07g01369 383 ProSitePatterns Tub family signature 2. 368 383 IPR018066 -
Cme07g01369 383 MobiDBLite consensus disorder prediction 1 54 - -
Cme07g01369 383 Gene3D - 48 100 - -
Cme07g01369 383 Pfam F-box domain 54 98 IPR001810 GO:0005515
Cme07g01369 383 MobiDBLite consensus disorder prediction 203 223 - -
Cme07g01369 383 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cme07g01369 383 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cme07g01369 383 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cme07g01369 383 PRINTS Tubby superfamily signature 293 310 IPR000007 -
Cme07g01369 383 PRINTS Tubby superfamily signature 311 327 IPR000007 -
Cme07g01369 383 PRINTS Tubby superfamily signature 340 359 IPR000007 -
Cme07g01369 383 PRINTS Tubby superfamily signature 361 383 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01369 Cme-Chr7:19237423 Cme07g01658 Cme-Chr7:22249029 7.14E-125 dispersed
Cme07g01369 Cme-Chr7:19237423 Cme06g00687 Cme-Chr6:4481950 1.29E-131 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41649 PF01167 Tub 6.90E-104 CL0395 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01369 K19600 - csv:101211968 673.315