Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01380 ATGACTTGTTTCTGTTTTGGTCCTAAAAGAAACAGAGATTCGTCGGCTGCACAAACAATTGCCGTTGTTGAAGAGATTTCAAATATTCCGAACGTTCGGTTGTACTCATACGAAGAACTTAGAAAAGCAACTGAAAATTTCAGGTCTGAAAACAAACTTGGACAGGGAGGTTTTGGATCTGTCTACAAGGGAAGGCTTGGAAATGGAACTTTGGCTGCCATAAAGGTACTATCCATGGATTCAAGCCAAGGGACACGGGAATTTTTGGCAGAAATCAATGTGATCTCAGTTATAAATCATGATAACCTGGTTAAGTTGCGTGGTTGTTGTGTGGAAGGGCAGCACCGGATCCTGGTCTATCCTTACCTAGAAAATAGCAGTCTTGACAAGATGCTTTTTGGTAGAGGACATAGGAATATTCAATTCAATTGGCAAACAAGGCGTAAAATATGCATTGGCATTGCACAGGGGCTAGCGTTCCTTCATGAGGAAGTTCAGCCGCATGTTATACACAGAGACATCAAGGCAAGCAATATCCTGCTGGATAAGGATTTAAACCCAAAAATTGCTGATTTTGGTCTTGCTAGACTACTCCCTGCTCACTTGACTCATGTTAGTACACGTGTTGCCGGGACAGTAGGTTATCTTGCACCTGAATTTGCCATACGGGGGCAAGCGACAAGAAGAACAGATATTTATAGTTTTGGTGTCTTACTTTTGGAGATTGTTTGTGGGAGGTACAACATAAATAGACGGTTACCTGCTGAAGAACCGTATCTTCTTGAAATGGATCATTCTCTTCGGGTAATACATAATTGA 819 41.64 MTCFCFGPKRNRDSSAAQTIAVVEEISNIPNVRLYSYEELRKATENFRSENKLGQGGFGSVYKGRLGNGTLAAIKVLSMDSSQGTREFLAEINVISVINHDNLVKLRGCCVEGQHRILVYPYLENSSLDKMLFGRGHRNIQFNWQTRRKICIGIAQGLAFLHEEVQPHVIHRDIKASNILLDKDLNPKIADFGLARLLPAHLTHVSTRVAGTVGYLAPEFAIRGQATRRTDIYSFGVLLLEIVCGRYNINRRLPAEEPYLLEMDHSLRVIHN 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19355066 19359232 + MELO3C016137.2.1 Cme07g01380 333396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01380 272 PIRSF ILK 23 269 - -
Cme07g01380 272 Gene3D Phosphorylase Kinase; domain 1 18 122 - -
Cme07g01380 272 ProSiteProfiles Protein kinase domain profile. 47 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01380 272 SMART serkin_6 47 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01380 272 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 257 - -
Cme07g01380 272 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Cme07g01380 272 Gene3D Transferase(Phosphotransferase) domain 1 123 268 - -
Cme07g01380 272 Pfam Protein kinase domain 48 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01380 272 SUPERFAMILY Protein kinase-like (PK-like) 25 254 IPR011009 -
Cme07g01380 272 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 2 257 - -
Cme07g01380 272 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01380 Cme-Chr7:19355066 Cme04g02712 Cme-Chr4:32554892 1.92E-98 dispersed
Cme01g00446 Cme-Chr1:3216870 Cme07g01380 Cme-Chr7:19355066 7.95E-14 transposed
Cme07g01430 Cme-Chr7:20005968 Cme07g01380 Cme-Chr7:19355066 1.93E-127 transposed
Cme08g02317 Cme-Chr8:30122970 Cme07g01380 Cme-Chr7:19355066 6.50E-90 transposed
Cme07g00504 Cme-Chr7:4173782 Cme07g01380 Cme-Chr7:19355066 1.39E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65017 PF00069 Pkinase 5.80E-46 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01380 - - csv:101213174 511.916