Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01383 ATGCCACAAGATCATCCAAAGAAGGAAGCCAAGGAAGTAAACTTTTTTACTGAATATGGGGATGCTAACAGATATAAGATTCTTGAAGTTGTTGGAAGGGGAAGTTATGGGGTTGTTTGTTCTGCAATTGACATGCAAACTGGGGAGAAAGTTGCAATAAAGAGAATTCATGATATTTTTGATCACGCATCTGATGCTATTCGGATCCTTCGTGAAGTTAAGTTGCTTAGATTGCTGCGGCATCCTGATATTGTTGACATCAAGCGCATTATGTTACCACCTTCTAAAAAGGAATTTAGGGACATTTATGTGGTTTTTGAGCTTATGGAATCTGATCTTCATCAAGTTATTAAAGCAAATGATGACTTGACGCGTGAACATCATCAATTCTTCCTCTATCAAATGCTACGTGCATTGAAATTCATGCATACAGCGAATGTGTATCATAGAGATCTGAAGCCAAAGAATATATTAGCAAATGCCAATTGCAAGCTTAAAATTTGTGATTTTGGACTTGCAAGAGTTGCTTTCAGTGATACCCCAACGACTGTATTTTGGACAGACTATGTTGCTACTAGATGGTACAGAGCTCCGGAGTTGTGTGGATCGTTCTGTTCCAAGTATACTCCTGCGATAGATATTTGGAGTGTTGGCTGCATATTTGCTGAGGTTTTGATGGGGAAGCCGCTTTTTCCGGGTAAAAGTGTTGCACATCAGTTGGATTTGATTACTGATCTTCTTGGGACCCCCTCATTGGAAACCATTGCAGGAGTTCGGAATGAAAAGGTCAGAAAATATTTGACAGAAATGAAAAAGAAATCTGCAGTTCCATTTTCACAAAGATTTCCCAAGGCAGATCCTACAGCCATCCGCTTATTGGAAAGACTATTAGCATTTAATCCAAAGGATCGACCATCGGCTGTGGAGGCTCTGGCTGATCCTTACTTTAAAGGCCTTGCCAAAGTTGAAAGAGAGCCTTCTTGTCAGCCTATCTCAAGATCGGAATTTGAGTTTGAGAGACAGAAATTAACAAAGGATGATGTTAGGGAATTGTTGTACAGAGAAATATTAGAATATCATCCTCAAATTCGTGAAGATTATTTGAATGGAACTGAGACTACAAAGCTACACTATCCTAGCGTTACAGGCCATTTTAAAAGCCAATTCACCTTCCACAAGGAGAATAACGGTAAAAGCGCACCTGTTTTACCTCTAGAACGGAAACACTTCTCCCTGCCACGGTCCACCGTTTGCACAAATTTGGTTTCACCTGATCATGAATCTGTTCGGCGAAATCCCAAAGTTTGTAATAATAGTATGGGATTACCAGATAGAACATTTGGGAATCCATCGAAGGCTTATCATCCACCTAAAGTGCCTACTGGTATGAACATATTTCTCACGGTTTTCCCCCTCAAAGTTTCTGTCTTTTCTTTTCAATGGACAAATTCTGTTAAGAGTATCTTTTGGGCGAGGATCTTGTAA 1485 39.8 MPQDHPKKEAKEVNFFTEYGDANRYKILEVVGRGSYGVVCSAIDMQTGEKVAIKRIHDIFDHASDAIRILREVKLLRLLRHPDIVDIKRIMLPPSKKEFRDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFCSKYTPAIDIWSVGCIFAEVLMGKPLFPGKSVAHQLDLITDLLGTPSLETIAGVRNEKVRKYLTEMKKKSAVPFSQRFPKADPTAIRLLERLLAFNPKDRPSAVEALADPYFKGLAKVEREPSCQPISRSEFEFERQKLTKDDVRELLYREILEYHPQIREDYLNGTETTKLHYPSVTGHFKSQFTFHKENNGKSAPVLPLERKHFSLPRSTVCTNLVSPDHESVRRNPKVCNNSMGLPDRTFGNPSKAYHPPKVPTGMNIFLTVFPLKVSVFSFQWTNSVKSIFWARIL 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19373528 19378283 + MELO3C016139.2.1 Cme07g01383 333399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01383 494 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01383 494 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Cme07g01383 494 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Cme07g01383 494 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cme07g01383 494 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Cme07g01383 494 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01383 494 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01383 494 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 19 10 440 - -
Cme07g01383 494 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 10 440 - -
Cme07g01383 494 SUPERFAMILY Protein kinase-like (PK-like) 20 320 IPR011009 -
Cme07g01383 494 CDD STKc_TDY_MAPK 24 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01383 Cme-Chr7:19373528 Cme11g01943 Cme-Chr11:27494941 0 dispersed
Cme07g01383 Cme-Chr7:19373528 Cme11g01564 Cme-Chr11:23160600 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65018 PF00069 Pkinase 7.80E-65 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01383 - K04371 csv:101213897 935.25