Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme07g01422 | ATGGAGGACGATTACTCCATCTTCCCTCCCGATTCAGATCTCGATTTCAGTTTCACTTCCACCACCACCGACCGCACCTTCACCACCTCCTCCAGCGCCCGCACCAGCCTTGCTCGCAGCAGTCTAACACTTAGCTTCAATGAATCTCGTCTCTCCGCCGCTGCCGCCGCCCTCAACCTCCGCCCCCACCACCGCTCCGACTCTCACTGGTCCGCCATCAGAGCCGCTACTACTCTCTCTTCCGACGGCCATCTCCACCTCCGCCACCTCAAACTCATCCGCCATCTCGGCACCGGCAACCTCGGCCGTGTGTTCTTGTGCCATTTGAGAGACAACGATCATGCCAGTTTCGCCCTGAAAGTGGTGGATAAGGAAGCTCTCAGTAACAAGAAGCTTTCGCAGGTTCAAACGGAAGCCGAGATTCTGGCTTCTTTGGACCACCCGTTTCTCCCAACTCTATACGCGCGTCTCGACGTCTCTCATTACACGTGCCTCCTTATCGACTATTGTCCTGCAGGAGACCTCCACTCCCTCCTCCGTAAACAGCCTGGTAGCCGCTTCTCTGTTGCGGCGGCGAGATTCTTCGCAGCGGAGGTGTTGGTGGCGCTCGAGTACCTTCACGCCCTTGGGATCGTGTACCGTGATCTCAAGCCCGAGAACGTTCTTCTGCGTGAGGATGGCCACGTCATGCTCTCGGATTTCGATTTGTGTTTTAAGTCCGACGTGGTACCCACATTTCACACGTGGACTCGCCCGGGACCAAAGGCTACTGGCTGCTGCCTTGGGTGGCGCACCACGCCAGATGACGAAGAGGAGATTGTCGGGGAGTTTGTGGCGGAGCCGACGGCTGCGTTTTCCAAGTCATGTGTAGGGACTCATGAGTACTTGGCGCCGGAGTTAGTGAGCGGCGGTGGTCACGGTAACGGCGTGGATTGGTGGGCGTTTGGGGTGTTTGTTTATGAGCTATTGCACGGGACGACGCCTTTTAAAGGAGTTAATAAGGAGGGTACATTAAGAAACATTGCGTCGTCGGAGGGGGTGAAGTTCAGAGCAGCGGGGGAGGAAGAGGAGGGGATGGGGGAGGCGAGAGATCTGATAGAGAGGCTGTTGGTGAAAGATCCGGCGATGCGGTTGGGCTCGGAGAAAGGAGCGACGGAGATCAAACGGCATCCGTTCTTCGAGGGTATAAAATGGCCGTTGATCAGGACGTATCGGGTGCCGGAGGTGTACGGGATGATGAGAAAAGGTAGATCACAGGTGAGCCATGTGAGAGGCGTGAGCCAACGCATACGGCGGCGGGGGTGGTGGAACTGGAGGAAAGTCATCAGCAACGGGTTAATTAAAAATGGAAGTTGCAGTAAATCTCATAGCAATACCAATTTTTATAGTTATAGCTCTAAAAAGAAGACAGGTTAA | 1416 | 55.23 | MEDDYSIFPPDSDLDFSFTSTTTDRTFTTSSSARTSLARSSLTLSFNESRLSAAAAALNLRPHHRSDSHWSAIRAATTLSSDGHLHLRHLKLIRHLGTGNLGRVFLCHLRDNDHASFALKVVDKEALSNKKLSQVQTEAEILASLDHPFLPTLYARLDVSHYTCLLIDYCPAGDLHSLLRKQPGSRFSVAAARFFAAEVLVALEYLHALGIVYRDLKPENVLLREDGHVMLSDFDLCFKSDVVPTFHTWTRPGPKATGCCLGWRTTPDDEEEIVGEFVAEPTAAFSKSCVGTHEYLAPELVSGGGHGNGVDWWAFGVFVYELLHGTTPFKGVNKEGTLRNIASSEGVKFRAAGEEEEGMGEARDLIERLLVKDPAMRLGSEKGATEIKRHPFFEGIKWPLIRTYRVPEVYGMMRKGRSQVSHVRGVSQRIRRRGWWNWRKVISNGLIKNGSCSKSHSNTNFYSYSSKKKTG | 471 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 19932244 | 19933833 | - | MELO3C016172.2.1 | Cme07g01422 | 333438 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme07g01422 | 471 | Gene3D | Transferase(Phosphotransferase) domain 1 | 286 | 413 | - | - | |
Cme07g01422 | 471 | Gene3D | Phosphorylase Kinase; domain 1 | 414 | 423 | - | - | |
Cme07g01422 | 471 | CDD | STKc_phototropin_like | 88 | 409 | - | - | |
Cme07g01422 | 471 | Gene3D | Phosphorylase Kinase; domain 1 | 89 | 173 | - | - | |
Cme07g01422 | 471 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 211 | 223 | IPR008271 | GO:0004672|GO:0006468 | |
Cme07g01422 | 471 | ProSiteProfiles | Protein kinase domain profile. | 90 | 393 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme07g01422 | 471 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WAG1 | 10 | 423 | - | - | |
Cme07g01422 | 471 | Pfam | Protein kinase domain | 92 | 393 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme07g01422 | 471 | PANTHER | FLIPPASE KINASE 1-RELATED | 10 | 423 | - | - | |
Cme07g01422 | 471 | SMART | serkin_6 | 90 | 393 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme07g01422 | 471 | Gene3D | Transferase(Phosphotransferase) domain 1 | 174 | 241 | - | - | |
Cme07g01422 | 471 | SUPERFAMILY | Protein kinase-like (PK-like) | 69 | 421 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme07g01422 | Cme-Chr7:19932244 | Cme06g00013 | Cme-Chr6:92673 | 1.32E-112 | dispersed | |
Cme07g01422 | Cme-Chr7:19932244 | Cme08g01220 | Cme-Chr8:8594012 | 2.25E-111 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65020 | PF00069 | Pkinase | 6.10E-54 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme07g01422 | - | - | csv:101217611 | 832.402 |