Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01422 ATGGAGGACGATTACTCCATCTTCCCTCCCGATTCAGATCTCGATTTCAGTTTCACTTCCACCACCACCGACCGCACCTTCACCACCTCCTCCAGCGCCCGCACCAGCCTTGCTCGCAGCAGTCTAACACTTAGCTTCAATGAATCTCGTCTCTCCGCCGCTGCCGCCGCCCTCAACCTCCGCCCCCACCACCGCTCCGACTCTCACTGGTCCGCCATCAGAGCCGCTACTACTCTCTCTTCCGACGGCCATCTCCACCTCCGCCACCTCAAACTCATCCGCCATCTCGGCACCGGCAACCTCGGCCGTGTGTTCTTGTGCCATTTGAGAGACAACGATCATGCCAGTTTCGCCCTGAAAGTGGTGGATAAGGAAGCTCTCAGTAACAAGAAGCTTTCGCAGGTTCAAACGGAAGCCGAGATTCTGGCTTCTTTGGACCACCCGTTTCTCCCAACTCTATACGCGCGTCTCGACGTCTCTCATTACACGTGCCTCCTTATCGACTATTGTCCTGCAGGAGACCTCCACTCCCTCCTCCGTAAACAGCCTGGTAGCCGCTTCTCTGTTGCGGCGGCGAGATTCTTCGCAGCGGAGGTGTTGGTGGCGCTCGAGTACCTTCACGCCCTTGGGATCGTGTACCGTGATCTCAAGCCCGAGAACGTTCTTCTGCGTGAGGATGGCCACGTCATGCTCTCGGATTTCGATTTGTGTTTTAAGTCCGACGTGGTACCCACATTTCACACGTGGACTCGCCCGGGACCAAAGGCTACTGGCTGCTGCCTTGGGTGGCGCACCACGCCAGATGACGAAGAGGAGATTGTCGGGGAGTTTGTGGCGGAGCCGACGGCTGCGTTTTCCAAGTCATGTGTAGGGACTCATGAGTACTTGGCGCCGGAGTTAGTGAGCGGCGGTGGTCACGGTAACGGCGTGGATTGGTGGGCGTTTGGGGTGTTTGTTTATGAGCTATTGCACGGGACGACGCCTTTTAAAGGAGTTAATAAGGAGGGTACATTAAGAAACATTGCGTCGTCGGAGGGGGTGAAGTTCAGAGCAGCGGGGGAGGAAGAGGAGGGGATGGGGGAGGCGAGAGATCTGATAGAGAGGCTGTTGGTGAAAGATCCGGCGATGCGGTTGGGCTCGGAGAAAGGAGCGACGGAGATCAAACGGCATCCGTTCTTCGAGGGTATAAAATGGCCGTTGATCAGGACGTATCGGGTGCCGGAGGTGTACGGGATGATGAGAAAAGGTAGATCACAGGTGAGCCATGTGAGAGGCGTGAGCCAACGCATACGGCGGCGGGGGTGGTGGAACTGGAGGAAAGTCATCAGCAACGGGTTAATTAAAAATGGAAGTTGCAGTAAATCTCATAGCAATACCAATTTTTATAGTTATAGCTCTAAAAAGAAGACAGGTTAA 1416 55.23 MEDDYSIFPPDSDLDFSFTSTTTDRTFTTSSSARTSLARSSLTLSFNESRLSAAAAALNLRPHHRSDSHWSAIRAATTLSSDGHLHLRHLKLIRHLGTGNLGRVFLCHLRDNDHASFALKVVDKEALSNKKLSQVQTEAEILASLDHPFLPTLYARLDVSHYTCLLIDYCPAGDLHSLLRKQPGSRFSVAAARFFAAEVLVALEYLHALGIVYRDLKPENVLLREDGHVMLSDFDLCFKSDVVPTFHTWTRPGPKATGCCLGWRTTPDDEEEIVGEFVAEPTAAFSKSCVGTHEYLAPELVSGGGHGNGVDWWAFGVFVYELLHGTTPFKGVNKEGTLRNIASSEGVKFRAAGEEEEGMGEARDLIERLLVKDPAMRLGSEKGATEIKRHPFFEGIKWPLIRTYRVPEVYGMMRKGRSQVSHVRGVSQRIRRRGWWNWRKVISNGLIKNGSCSKSHSNTNFYSYSSKKKTG 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19932244 19933833 - MELO3C016172.2.1 Cme07g01422 333438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01422 471 Gene3D Transferase(Phosphotransferase) domain 1 286 413 - -
Cme07g01422 471 Gene3D Phosphorylase Kinase; domain 1 414 423 - -
Cme07g01422 471 CDD STKc_phototropin_like 88 409 - -
Cme07g01422 471 Gene3D Phosphorylase Kinase; domain 1 89 173 - -
Cme07g01422 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Cme07g01422 471 ProSiteProfiles Protein kinase domain profile. 90 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01422 471 PANTHER SERINE/THREONINE-PROTEIN KINASE WAG1 10 423 - -
Cme07g01422 471 Pfam Protein kinase domain 92 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01422 471 PANTHER FLIPPASE KINASE 1-RELATED 10 423 - -
Cme07g01422 471 SMART serkin_6 90 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01422 471 Gene3D Transferase(Phosphotransferase) domain 1 174 241 - -
Cme07g01422 471 SUPERFAMILY Protein kinase-like (PK-like) 69 421 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01422 Cme-Chr7:19932244 Cme06g00013 Cme-Chr6:92673 1.32E-112 dispersed
Cme07g01422 Cme-Chr7:19932244 Cme08g01220 Cme-Chr8:8594012 2.25E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65020 PF00069 Pkinase 6.10E-54 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01422 - - csv:101217611 832.402