Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01471 ATGGGATCCAGTGGAAGTAAATCGTCGAGTAGTTCGCTGCCGGCGCAGGAGACTCTCTCGTGTTCTGGGAGAATCCTTAGGGGGAGATCCAAAGGCCGGAGAGTTTTTCAGTCTGCTTGCCTTGGTACCCCCTCTGGATCGCACCATAGCGACAATGACGATAGTGATTCTGAAAGTGAGAACAAAAAGAATGCTCAAGATTATTCATCTACAAATCAGACTGCTCAAGCATTAGATCAGATGAAAGTTGAGGGCTACAGGAGGGTAAAAGCTGAGGAATCTGTTGAAATGCCTTGCATATCATCGAATTCTACGCTTAATGGATGGGATCAAGCAGGTGTTGCTGTTACAGCCCCCAGAGCTGGAAGCACCTCTGCTCGTGTAACTTCCCTGCAATCGTTGAACACTTCGAGTAACTTCCTTTCTCGCTTTAGTTTCATTCCTGGTAATGTAAGCTTTAGACTTAGTAGAGCAAGCAGCTTAGGATCATCTAGATCTTACCCTGTGTCTTCAACAAATCTCTCAATGTTGAATGATGAAAACGAGCCTCATCTATCAGACAGACCTACTAGACGCTTGGATGGTCAAGATGAAACTCAACAAGGTAGGGACTTGCTTCCTGCATCAGTAGCTAGTGAAACTCATACTCAATGTTATGGAGACAGTCCTGCTAATTTTAGGTTAAATACACAATCTTCTGGTCTTTCTGATAACTTACCAGAGAATCAGTCAATTTCTTCTACCCATGACATGGCTGGTGCTTGTAATAATTTTGGAGTAGGGTCAGGAAGCCTTTCCCATCCTCGAACTCTACCTGAAAATGAAAGCAGTGAGATTAGACAGTCTGACAGGCGGACCGGATCTAGAGAACCGGTTGAGCGGAATTTTCGTTTTAGTCGGACACTTAGTGTTGGAAGACTCCGTGATAGAGTTCTTCGGAGATCATCGCTATCTGACTTCACATTTTGTCCTCCTCAACAAGAGGGAGATGAGAGAGATGCAAGTCATAGTGGCGATGACCAACATGTATGGACTGCTGAGACAAGGGGTTTGGCATCTGAAGATAATGTTATGAGCTCACCAACAACATCAGGTTTTCAAGCTTCTAGTCTATCCAGTTCCCTTTTCAGCACTCAAGATTTTGAAGTGGATACTACCCGACCTAGAGAAGCTAGATATCACGATCTGCTGGAACACAGGTCAAATTTCCTTGAACGGAGAAGAAGAATACGGTCCCAGGTTCGTGCCCTACAGCGGCTGGGAAGTCGCTTTGAGAACCTATCTGGGCATGAGAGATCATGTATATTATCCGGTCAGCATAGAACCGGTCATTGTACTTGTCGTATCAATAATCGTGACACAAATATAAATGATAACACCAGTGCTAGAGCCAGTATATCAAGAATTGTAATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCCTCCCGCCCTGCATCATCTATTGGCTCTCTACCTGCACCGAACGATGTTGTAGATTCTTTGCCTGTTAAATTTTATTCCAAGTTGCAAAAGCATCAAACCGAGGAAGCTGCCCAATGCTACATATGCCTGGTTGAGTACGAGGAAGGAGATAGCATGAGAGTGTTGCCTTGCCACCATGAGTTTCACGCCACATGTGTTGACAAATGGCTGAAGGAGATTCACAGGGTATGTCCACTTTGTCGAGGGGACATATGCAGCAGATCTGATGCGTTGTCAGACGATGTCAAGTGA 1764 44.67 MGSSGSKSSSSSLPAQETLSCSGRILRGRSKGRRVFQSACLGTPSGSHHSDNDDSDSESENKKNAQDYSSTNQTAQALDQMKVEGYRRVKAEESVEMPCISSNSTLNGWDQAGVAVTAPRAGSTSARVTSLQSLNTSSNFLSRFSFIPGNVSFRLSRASSLGSSRSYPVSSTNLSMLNDENEPHLSDRPTRRLDGQDETQQGRDLLPASVASETHTQCYGDSPANFRLNTQSSGLSDNLPENQSISSTHDMAGACNNFGVGSGSLSHPRTLPENESSEIRQSDRRTGSREPVERNFRFSRTLSVGRLRDRVLRRSSLSDFTFCPPQQEGDERDASHSGDDQHVWTAETRGLASEDNVMSSPTTSGFQASSLSSSLFSTQDFEVDTTRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGHCTCRINNRDTNINDNTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPASSIGSLPAPNDVVDSLPVKFYSKLQKHQTEEAAQCYICLVEYEEGDSMRVLPCHHEFHATCVDKWLKEIHRVCPLCRGDICSRSDALSDDVK 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20488360 20492245 + MELO3C016212.2.1 Cme07g01471 333487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01471 587 SMART ring_2 530 571 IPR001841 -
Cme07g01471 587 MobiDBLite consensus disorder prediction 161 180 - -
Cme07g01471 587 MobiDBLite consensus disorder prediction 49 63 - -
Cme07g01471 587 MobiDBLite consensus disorder prediction 1 80 - -
Cme07g01471 587 MobiDBLite consensus disorder prediction 181 199 - -
Cme07g01471 587 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 579 - -
Cme07g01471 587 MobiDBLite consensus disorder prediction 202 272 - -
Cme07g01471 587 Pfam Ring finger domain 529 572 IPR001841 -
Cme07g01471 587 ProSiteProfiles Zinc finger RING-type profile. 530 572 IPR001841 -
Cme07g01471 587 MobiDBLite consensus disorder prediction 1 19 - -
Cme07g01471 587 MobiDBLite consensus disorder prediction 320 339 - -
Cme07g01471 587 MobiDBLite consensus disorder prediction 64 79 - -
Cme07g01471 587 MobiDBLite consensus disorder prediction 161 292 - -
Cme07g01471 587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 492 577 IPR013083 -
Cme07g01471 587 MobiDBLite consensus disorder prediction 273 292 - -
Cme07g01471 587 CDD mRING-H2-C3H2C2D_ZSWM2 529 572 - -
Cme07g01471 587 SUPERFAMILY RING/U-box 510 578 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01104 Cme-Chr2:16035438 Cme07g01471 Cme-Chr7:20488360 2.94E-48 dispersed
Cme03g00057 Cme-Chr3:825441 Cme07g01471 Cme-Chr7:20488360 1.11E-12 dispersed
Cme06g02364 Cme-Chr6:30917017 Cme07g01471 Cme-Chr7:20488360 2.90E-09 dispersed
Cme07g01471 Cme-Chr7:20488360 Cme05g01679 Cme-Chr5:25794939 3.05E-13 dispersed
Cme07g01471 Cme-Chr7:20488360 Cme08g01150 Cme-Chr8:8111962 2.85E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01471 - - csv:101213468 1062.75