Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01488 ATGAATAATATTATGACGAAGTATAATAATTTCCTCATCAATCTTACTCTATCTTCTCTTCTCCCTCTTCTTGCTTTCCTCTTCATGATCAATCCCACCCCTTCATACCTTTCTAACCTTGTTGTCTTTGGCGATCCCGTCGACTGTCCTCATCCTCACCACCACCACCACCATGAAGACCCTGATGAAGATGATCAATCAGTGATAAGTTCTATTTGTGATAACTTTCCCACCAATCTCGTTCCACCAGAAACCACCAACACTTCTGTTTTTTGTGTTGATCAAAACGGATGTTGCAACTTCACGACGGTTCAAGCAGCAGTCGATGCAGTGCCAAACTTGAGCATCAAACGAAACATAATTTGGATAAATGCCGGAATTTACTATGAGAAGGTGATGGTACCAAAATCAAAACCAAATGTGACATTTCAAGGACAAGGCTATACAACAACCGCTATTGTTTGGAATGACACCGCCAATTCTTCACATGGCACATTCTATAGTGGCTCTGTCCAAGTCTTCTCTTCCAATTTTATTGCCAAGAATATAAGCTTCATGAATGTGGCGCCAATTCCGGGGCCGGGAGACGTCGGAGCACAGGCGGTGGCGATCAGAGTCGGTGGAGACCAAGCGGCTTTTTGGAGCTGCGGATTTTTTGGCGCTCAAGACACTCTTCACGACGACCGTGGCCGCCATTACTTCAAAGATTGCTACATCCAAGGCTCCATCGATTTCATCTTCGGCAACGGAAGATCCTTCTACGAGAGTTGCCAATTGGTTTCTATGGCGAATCCGGTTCCGCAAGGATCTAAGTTTGTGAATGGAGCGGTGACGGCCCACGGCAGAGCCTCCGCTGAGGAGAACTCAGGATTTTCTTTTGTAAATTGCAGCATCGGCGGGACCGGCAGAGTGTGGCTTGGCCGCGCGTGGCGGCCGTTCTCTCGTGTCGTTTTCGCTAACACCGTTATGACGGATATCATTGCACCGGAAGGGTGGAATGACTTTAATGACCCCACAAGGGACCAGACAATCTTCTATGGAGAGTACAACTGCAGTGGAGCAGGAGCCAATATGAGCTCAAGGGCTCCCTATGTTCAAAGGCTTAATGATACTCAAGTTTCCTCTTTCCTCAATCTATCCTTCATTGATGCTGACCAATGGCTTCAACCCTATTCATTCTTTTAA 1185 46.58 MNNIMTKYNNFLINLTLSSLLPLLAFLFMINPTPSYLSNLVVFGDPVDCPHPHHHHHHEDPDEDDQSVISSICDNFPTNLVPPETTNTSVFCVDQNGCCNFTTVQAAVDAVPNLSIKRNIIWINAGIYYEKVMVPKSKPNVTFQGQGYTTTAIVWNDTANSSHGTFYSGSVQVFSSNFIAKNISFMNVAPIPGPGDVGAQAVAIRVGGDQAAFWSCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNGRSFYESCQLVSMANPVPQGSKFVNGAVTAHGRASAEENSGFSFVNCSIGGTGRVWLGRAWRPFSRVVFANTVMTDIIAPEGWNDFNDPTRDQTIFYGEYNCSGAGANMSSRAPYVQRLNDTQVSSFLNLSFIDADQWLQPYSFF 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20767836 20773971 - MELO3C016230.2.1 Cme07g01488 333504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01488 394 PANTHER PECTINESTERASE 8-RELATED 51 391 - -
Cme07g01488 394 ProSitePatterns Pectinesterase signature 2. 239 248 IPR033131 -
Cme07g01488 394 SUPERFAMILY Pectin lyase-like 89 391 IPR011050 -
Cme07g01488 394 Gene3D - 89 393 IPR012334 -
Cme07g01488 394 Pfam Pectinesterase 93 384 IPR000070 GO:0030599|GO:0042545
Cme07g01488 394 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 51 391 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02471 Cme-Chr4:31220936 Cme07g01488 Cme-Chr7:20767836 1.77E-70 dispersed
Cme05g00222 Cme-Chr5:1569834 Cme07g01488 Cme-Chr7:20767836 7.31E-81 dispersed
Cme05g00223 Cme-Chr5:1574767 Cme07g01488 Cme-Chr7:20767836 6.75E-79 dispersed
Cme05g01537 Cme-Chr5:24752763 Cme07g01488 Cme-Chr7:20767836 9.86E-74 dispersed
Cme07g01488 Cme-Chr7:20767836 Cme07g01692 Cme-Chr7:22479529 7.37E-89 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01488 - - csv:101220702 733.791