Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01514 ATGGGCATCTGTCTGGTCAAATGTTCTGGCTTGTTGATTCTTCATGTTCTACTTCTTTGTATGGCAATGAATAAAAGCACTGGCCTCACACCTGATGGTGCGGCACTTCTAAGCTTTAGGATGGCAGTTGCCAGTTCTGATGGAGTCATCTTTCAGTGGAGACCAGAGGATCCAAACCCTTGTAACTGGACAGGAGTGGTCTGCGATCCAAAAACGAAGAGAGTAATCTCATTGAAACTTGCGAGTCACAAACTGAGTGGGTTCATTGCTCCTGAACTTGGGAAGCTAGACCAATTGAAGACCCTGATTCTTTCAGACAACAATTTATATGGAACAATACCATCAGAACTGGGAAATTGCTCGCAGTTGCAGGGAATGTTCTTGCAAAGAAACTACCTAAGCGGAGTCATTCCCTATGAGCTGGGAAACCTTTTAGAGTTGGAAATGTTAGACGTTTCTAGCAACTCACTTAGTGGAAATATCCCAACGTCCCTTGGGAATTTGGATAAGCTGGCTATTCTCAATGTGTCTTCAAATTTTTTAATTGGACCAGTACCTTCTGATGGTGTTCTTTCCAAGTTTTCAGAGACTTCCTTTGTCGGAAATCGTGGTTTGTGTGGGAAACAAGTTAATGTCATTTGCAAAGACGATAATGCTGAACCTGGAACAAATTCCGAGTCCACAAGCTCAGGGCAAAATCAAATGAGGAGGAAGTATTCTGGCCGGCTGCTCATAAGTGCATCAGCTACAGTGGGGGCACTACTACTTGTTGCTCTTATGTGTTTCTGGGGTTGCTTTCTTTACAAAAGATTTGGCAAAAATGACAAGAAAGGTCTTGCGAAGGATGTTGGTGGAGGTGCATCCGTTGTGATGTTTCATGGAGACTTGCCATACTCTTCAAAAGACATCATGAAGAAGTTGGAAACCTTGAATGAGGAACACATAATCGGTTCTGGGGGTTTTGGAACAGTTTACAGGCTTGCAATGGATGATGGCAATGTATTTGCTTTGAAAAATATTGTAAAGATAAATGAGGGGTTTGATCACTTTTTTGAGAGGGAACTTGAAATTCTTGGAAGTTTGAAGCATCGCTACCTTGTTAATTTGAGAGGATATTGCAACTCTCCCACATCAAAACTATTGATTTATGATTATCTATCTGGGGGAAGCCTTGATGAGGCCCTTCATGAAAGATCTGAGCAATTAGATTGGGACACACGCTTGAATATTATATTGGGAGCAGCAAAAGGGCTTGCCTATCTGCACCACGATTGTTCACCCAGAATCATACATCGGGATATCAAGTCAAGCAACATTTTACTTGATGGTAATCTGGACGCTCGAGTTTCTGACTTTGGACTTGCCAAGCTTCTGGATGATGATAAATCTCATATTACAACCATTGTTGCCGGAACATTTGGTTATTTGGCCCCTGAATATATGCAAAGTGGTAGGGCAACGGAAAAGACTGATGTATATAGTTTTGGAGTTCTGGTACTTGAAGTTCTGAGTGGAAAACGACCTACGGATGCATCATTTATTGAGAAAGGCCTGAACATTGTTGGCTGGCTAAACTTTCTTGTCACGGAGAATAGGCAACGAGAAATAGTTGATCCACAATGTGAAGGAGTACAATCGGAAACACTTGACTCATTGCTAAGGCTTGCTATTCAGTGTGTTTCTTCAAGTCCAGATGATCGACCAACCATGCACCGAGTAGTCCAGTTCTTTGAATCCGAGGTTATGACGCCATGCCCAAGTGACTTCGATGATTCCAATTCTGATTAA 1788 42.17 MGICLVKCSGLLILHVLLLCMAMNKSTGLTPDGAALLSFRMAVASSDGVIFQWRPEDPNPCNWTGVVCDPKTKRVISLKLASHKLSGFIAPELGKLDQLKTLILSDNNLYGTIPSELGNCSQLQGMFLQRNYLSGVIPYELGNLLELEMLDVSSNSLSGNIPTSLGNLDKLAILNVSSNFLIGPVPSDGVLSKFSETSFVGNRGLCGKQVNVICKDDNAEPGTNSESTSSGQNQMRRKYSGRLLISASATVGALLLVALMCFWGCFLYKRFGKNDKKGLAKDVGGGASVVMFHGDLPYSSKDIMKKLETLNEEHIIGSGGFGTVYRLAMDDGNVFALKNIVKINEGFDHFFERELEILGSLKHRYLVNLRGYCNSPTSKLLIYDYLSGGSLDEALHERSEQLDWDTRLNIILGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLDDDKSHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLVTENRQREIVDPQCEGVQSETLDSLLRLAIQCVSSSPDDRPTMHRVVQFFESEVMTPCPSDFDDSNSD 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20996417 21005573 + MELO3C016252.2.1 Cme07g01514 333530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01514 595 Gene3D Transferase(Phosphotransferase) domain 1 386 584 - -
Cme07g01514 595 SUPERFAMILY L domain-like 30 193 - -
Cme07g01514 595 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FEI 1 3 595 IPR031071 GO:0004672|GO:0005524|GO:0030244
Cme07g01514 595 Gene3D Ribonuclease Inhibitor 30 215 IPR032675 -
Cme07g01514 595 ProSiteProfiles Protein kinase domain profile. 310 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01514 595 PANTHER RECEPTOR-LIKE PROTEIN 55 3 595 - -
Cme07g01514 595 Pfam Protein kinase domain 312 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01514 595 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Cme07g01514 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Cme07g01514 595 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Cme07g01514 595 SMART serkin_6 310 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme07g01514 595 SUPERFAMILY Protein kinase-like (PK-like) 293 577 IPR011009 -
Cme07g01514 595 Gene3D Phosphorylase Kinase; domain 1 285 385 - -
Cme07g01514 595 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00770 Cme-Chr7:7071782 Cme07g01514 Cme-Chr7:20996417 0 dispersed
Cme07g01514 Cme-Chr7:20996417 Cme07g01730 Cme-Chr7:22801598 2.30E-107 dispersed
Cme07g01514 Cme-Chr7:20996417 Cme12g01746 Cme-Chr12:24175729 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65023 PF00069 Pkinase 1.90E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01514 - - csv:101205992 1187.94