Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01520 ATGCCTGGTTTGGTCTCCGTCAAAACCCCCCCGGACGCCCCGCCTCTCCGGATCTCTGTCCCCGAGACACCCCCCGCCACTAATCACCGACCCCCATCTCCTCTATCCAAGAAACAACCCTCTCCTTCTCCTTCCCGATCCAAGCCTTCGCCTAACGGGAAGAAGAAGCTTCAACCGGAGAGTCCCACGTCGGCCCAATTTCCCCCGGATTCTTCTCTTGACAACCCCGATCTTGGGCCTTTTCTTCTGAAGCTTGCTCGTGACACTATTGCCTCCGGTGATGGCCCGAATAAAGCTCTAGATTACGCTATCCGAGCATCGAAGTCGTTTGAGCGATGCGCTGTGGATGGTGAACCGAGCTTGGATTTGGCTATGAGTCTTCATGTTCTGGCTGCTATTTATTGTAGCTTGGGCCGGTTTGAGGAGGCGGTGCCGGTTCTTGAACAGGCGATTCAAGTTCCTGAGATTGGAAGAGGGCCGGATCATGCTCTTGCTGCTTTTTCTGGACATATGCAACTGGGTGATACGTATTCGATGCTGGGTCAGATCGAGCGGTCGATTGGTTGTTATGAAGAGGGCTTGAAGATTCAGATCGAGGCCTTGGGAGAGACGGATCCCAGAGTTGGGGAGACTTGCAGGTATTTATCTGAGGCGCACGTTCAAGCAATGCAGTTTGATAGAGCAGAACAATTGTGCAAGAAAACTCTTGAGATTCACCATGCACATAGTGAGCCTGCGTCACTCGAAGAAGCAGCTGACCGTCGTCTGATGGCGCTCATTTGCGAAGCTAAAGGTGACTATGAATCGGCACTTGAGCACCTTGTGCTGGCTAGTATGGCGATGATCGCTAATGGGCAAGATAGTGAGGTTGCTGCTATTGATGTGAGTATTGGAAATATTTACATGTCTCTATGTCGTTTCGACGAGGCAGTTTTCTCGTACCAAAAGGCTCTCACTGTATTCAAAGCATCTAAGGGTGACAACCATCCTTTGGTTGCTTCTGTCTTCATACGACTTGCCGACTTGTATCACCGGACTGGAAAGCTCCGGGAGTCCAAATCTTATTGCGAAAATGCAATGAGGATATTCTCAAAGCCTGTGCCTGGAACTTCGCCTGAAGAAATAGCTGGTGGGTTGACAGAAATATCAGCAATTTACGAGTCTGTTGACGAGCCCGAGGAGGCGTTGAAGCTCTTGCAGAAGGCAATGAAGATGTTAGAAGATAAACCTGGACAGCAAAGCACGATTGCTGGGATAGAAGCACGGATGGGAGTGATGTTTTACATGGTTGGAAGGTACGAAGACGCAAGAAATGCTTTCGAGAGTGCGATATCGAAACTCAGAGCCACCGGGGAGAGAAAATCAGCGTTCTTTGGTGTTGTGTTGAATCAAATGGGATTGGCCTGTGTGCAGTTGTTCAAGATAGATGAAGCTGCAGAGTTGTTTGAAGAAGCAAGAGGAATTTTAGAGCAAGAGTGTGGCAACTGTCATCAAGATACCATTGGAGTATATAGCAACCTCGCCGCAACCTATGATGCTATGGGAAGAGTCGATGATGCTATCGAAATATTGGAATCTGTTCTTAAGTTGAGAGAAGAGAAGCTTGGAATTGCGAATCCAGATTTTGAGGACGAAAAGAGGAGACTGGCTGAACTGCTGAAGGAAGCAGGCCGAACCCGAAACCGGAAAGCAAAGTCTCTGGAAAATCTCATTGATCCGAACTCTAGGAAAACAAAGAAAGAGACGACGAAGAAGTGGTCGGGCTTGGGATTTAGAATTTGA 1782 48.65 MPGLVSVKTPPDAPPLRISVPETPPATNHRPPSPLSKKQPSPSPSRSKPSPNGKKKLQPESPTSAQFPPDSSLDNPDLGPFLLKLARDTIASGDGPNKALDYAIRASKSFERCAVDGEPSLDLAMSLHVLAAIYCSLGRFEEAVPVLEQAIQVPEIGRGPDHALAAFSGHMQLGDTYSMLGQIERSIGCYEEGLKIQIEALGETDPRVGETCRYLSEAHVQAMQFDRAEQLCKKTLEIHHAHSEPASLEEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDSEVAAIDVSIGNIYMSLCRFDEAVFSYQKALTVFKASKGDNHPLVASVFIRLADLYHRTGKLRESKSYCENAMRIFSKPVPGTSPEEIAGGLTEISAIYESVDEPEEALKLLQKAMKMLEDKPGQQSTIAGIEARMGVMFYMVGRYEDARNAFESAISKLRATGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILEQECGNCHQDTIGVYSNLAATYDAMGRVDDAIEILESVLKLREEKLGIANPDFEDEKRRLAELLKEAGRTRNRKAKSLENLIDPNSRKTKKETTKKWSGLGFRI 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21039167 21042280 + MELO3C016258.2.1 Cme07g01520 333536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01520 593 MobiDBLite consensus disorder prediction 564 593 - -
Cme07g01520 593 MobiDBLite consensus disorder prediction 1 79 - -
Cme07g01520 593 Pfam Tetratricopeptide repeat 461 533 - -
Cme07g01520 593 Pfam Tetratricopeptide repeat 290 363 - -
Cme07g01520 593 SUPERFAMILY TPR-like 127 537 IPR011990 GO:0005515
Cme07g01520 593 SMART tpr_5 333 366 IPR019734 GO:0005515
Cme07g01520 593 SMART tpr_5 291 324 IPR019734 GO:0005515
Cme07g01520 593 SMART tpr_5 124 157 IPR019734 GO:0005515
Cme07g01520 593 SMART tpr_5 167 200 IPR019734 GO:0005515
Cme07g01520 593 SMART tpr_5 376 409 IPR019734 GO:0005515
Cme07g01520 593 SMART tpr_5 459 492 IPR019734 GO:0005515
Cme07g01520 593 SMART tpr_5 417 450 IPR019734 GO:0005515
Cme07g01520 593 SMART tpr_5 209 242 IPR019734 GO:0005515
Cme07g01520 593 SMART tpr_5 501 534 IPR019734 GO:0005515
Cme07g01520 593 SMART tpr_5 251 284 IPR019734 GO:0005515
Cme07g01520 593 ProSiteProfiles TPR repeat profile. 291 324 IPR019734 GO:0005515
Cme07g01520 593 MobiDBLite consensus disorder prediction 564 587 - -
Cme07g01520 593 Coils Coil 389 409 - -
Cme07g01520 593 Gene3D Tetratricopeptide repeat domain 278 458 IPR011990 GO:0005515
Cme07g01520 593 Gene3D Tetratricopeptide repeat domain 459 578 IPR011990 GO:0005515
Cme07g01520 593 Coils Coil 542 562 - -
Cme07g01520 593 Gene3D Tetratricopeptide repeat domain 170 277 IPR011990 GO:0005515
Cme07g01520 593 MobiDBLite consensus disorder prediction 14 47 - -
Cme07g01520 593 PANTHER - 1 592 - -
Cme07g01520 593 Gene3D Tetratricopeptide repeat domain 71 169 IPR011990 GO:0005515
Cme07g01520 593 ProSiteProfiles TPR repeat profile. 501 534 IPR019734 GO:0005515
Cme07g01520 593 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 592 - -
Cme07g01520 593 MobiDBLite consensus disorder prediction 48 71 - -
Cme07g01520 593 Pfam MalT-like TPR region 128 278 IPR041617 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01520 - - - csv:101207194 1122.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01973 Cme-Chr1:28114379 Cme07g01520 Cme-Chr7:21039167 4.74E-49 dispersed
Cme02g01966 Cme-Chr2:25916627 Cme07g01520 Cme-Chr7:21039167 0 dispersed
Cme07g01520 Cme-Chr7:21039167 Cme11g02274 Cme-Chr11:29845413 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g193 . Blo03g00263 . Bda08g00450 Bpe05g00710 . . . . Cmo16g00575 . . . . . Cpe14g00445 . . . . . . . . Cla07g01078 Cam07g1422 Cec07g1234 Cco07g1213 Clacu07g1138 Cmu07g1121 Cre07g1498 . . . . . . . Cme07g01520 . . . . . . Bma05g00892 Bma12g00623 . . . . Cma16g00526 . . . . . . . . . . . . . . . . . . . Csa04g00686 Chy07g01123 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001869 2 3 3 3 2 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 3 2 2 2 2 2 2 3 2 2 68