Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01523 ATGACCGAGCCGGATTCCGATCACCCATCTCCCCTTTTCCCCAAATCTAACCACCGTTCTTCTTCCGACGACCGGACCCCACTTATGGATTTCGATCTCGACTTGGACATTCCTTGGCCTTTGGATCAAATCCCTTCTTTTGGTTCTAATCCCATGTCCCCTTTTCTCCTTTCCACCTCCGATCATCTTGCTTCCCCTCTCTGGCCCTTCTCTGAAGCTGATGATGATGATGATTCTAAATTTACTGCCTATGCTTGCTCTGTTCTTGGTACTTCCAATTCACATTCTTTACCGCAAAAGCCGACGGAGAACCAAAAGTTTAAGATTCTTCCAGTTCCGTCTTCATCATGGGGAATACTGCCATCAGAGAATCCAGATGGGTATTGCTTAATCAAAGAAAAAATGGCACAAGCTCTTCGGTACATTAAAGAATCATCTGACCAGCATGTTCTAGCTCAAGTTTGGGCGCCTGTAAAAAGTGGTGGCAAGTTTGTACTTTCAACTTCCGGGCAACCGTTTTTCCTTGATTCACAGAGCAATGGACTTCATCAATATAGGATGGCCTCTTTGACGTTTATGTTTTCCTTGGATGCCGACCAGGATGGATATCTTGGGCTCCCAGGTCGTGTTTTCCAACAAAAGTTGCCAGAGTGGACTCCAAATGTGCAGTACTACTCAAGCAAGGAGTATCCCCGACTTAGTCACGCTCTTAACTACAATGTTCAGGGAACTTTGGCTTTGCCTGTTTTTGACCCTTCCGGCCACTCTTGTCTTGGTGTTCTTGAGCTAATCATGACCTCACCAAAGATCAATTATGCACCTGAGGTGGACAAAGTCTGCAAAGCTCTTGAGGCTGTCAATCTAAAAAGTTCGGAGATTTTGGACCATCCGAATAATCAGATACAATCTTGGCAATGCTTGTCAAACCAGATTTGCAATGAAGGTCGTCAGAATGCACTGGCTGAAATTTTGGAGGTACTCACAGTTGTATGCGAAACTCATAACTTACCATTGGCTCAAACCTGGGTTCCATGCAGGCACCGAAACGTGCTCGCCTACGGTGGAGGTTTGAAGAAAAGCTGTACTAGCTTTGATGGTAGTTGCATGGGACGGATCTGTATGTCCGCAACTGAAGTAGCATCCTATGTTGTCGATGCTCACATGTGGGGTTTTCGTGATGCATGTTTAGAACACCATTTACAAAAGGGTCAAGGGGTTTCGGGTAGAGCGTTTTTATCTCACAGCTCATGTTTTTGTGGAGACATCACCCAATTCTGTAAGACTGAGTACCCTTTGGTACACTATGCACTTATGTTTGGATTGAAGAGTTGTTTTTCGATCTGCTTACGAAGCACGTTTACTGGAGATGATGAGTACATTCTAGAATTTTTTCTGCCACCGAGCATTGTTGATTATCAGGAACAAAAGAATTTGTTGGGTGCATTAATGGCAACAATGAAGAAGCATTTCTACACTCTCAAAGTTGCTTCTGGAATCAACCTTGAGGACAAGGAAGGATTTGTTGAGATCATTCAAGCATCTAGAAATGGAGGATTTGACTCAAGACTTGAATATATTCAAATTCCGCAACCTGTGGAATTGCCACCTGCATCTGATGCCATGCCAAAAGCAGTAGAGGTAGCTGCATTAGAAACATTGCAACAACAATCTTTAATGGTTCATGATGCTCCGAAGGATGAAAACAATGGTGCTTGGGATGGGGAAAGCCACAAGCCCGTTCCTTGTCCACAGAATAAGGAAGTGAAAAAGACGTCCGAAAGGAAGCGTGGAAAGGCAGAGAAATCAATTAGTCTGGAGGTTCTTCAACAATATTTTGCTGGCAGTCTTAAGGATGCTGCTAAAAGCCTTGGCGTTTGTCCCACAACAATGAAGCGTATCTGTAGGCAACATGGGATCTCACGGTGGCCATCTCGGAAGATCAACAAGGTCAATCGTTCACTTTCAAAGCTAAAGCGTGTCATTGAATCTGTTCAAGGGGCTGAAGGAGCATTCGGAATATCTTCTCTGGCTACCAGTCCACTTCCTGTTACTGTTAGCTCGAGTTCTCATCCTTTAACTCCAGAAGGGTCTAACCAGCAAAACTTTGTTGCTTCTCAACCATCTGATTCTCAATATAAGGAAACAAACACCTCAGAAGCACAGACAAACGACACACAGGCTAGGTTGGAAGATCAATTACATAGAGGAGTGTTGAGTCCAGAAGAACCAATTCACGAACAAAATGGATTCCTGCCAAAGTTTGGAAATGGTTTGAACAATTTTCGAACAGGGAGCGGATCACGGGAAGAGAGTGCCGGGACGCCTACTTCTCATGGTTCATGCCAAGGTAGTCCTGCAAACGACAGTGCACTAGCAAATAATCCCATTTCTATTCCTCAGCATGAACAATGTGTAAGAAGAGAATCTCCTGAAGTAGCATTCCATCCAATCGATAAACTGAATGTATCGGCGCCTGCTTGTTCAATCCCAGATACGCTTGTGATGGTTGAGCCTGAGGAACCATTTGGAGGAATGCTGATCGAGGATGCAGGAAGTTCTAAGGACTTAAAAAATCTTTGTGCTTCTGTTGCGGATGCTGTTCTTGATGAGCCAGTACCCGAATTTTGTTGGTCCAACCATCATGATATAGCTCTGAGACAACCTATGGACTCAATTTGTCACACAGTCCCTCATATATCACTAAGGCAAGAACCAAGGAGGATGACTATCAAGGCCACTTATAAGGAAGATATTATTCGATTTCGAATTCCTTTGAGTTCTGGTATTGTGGAGTTGAGAGAAGAAGTGGCAAAGAGACTGAAATTGGAGGTTGGTACGTTCGATATCAAATATATTGATGACGATCGTGAATGGGTTCTTATTGCGTGTGATGCAGATCTACAAGAGTGTGTAGATATCTCGAAGTCGTCAGGAAGCAATATCATAAGATTGTCAGTTCATGATTTAAATGTCAATCTTGGGAGTTCTTGTGAGAGTACTGGGGAGTGA 3009 43.77 MTEPDSDHPSPLFPKSNHRSSSDDRTPLMDFDLDLDIPWPLDQIPSFGSNPMSPFLLSTSDHLASPLWPFSEADDDDDSKFTAYACSVLGTSNSHSLPQKPTENQKFKILPVPSSSWGILPSENPDGYCLIKEKMAQALRYIKESSDQHVLAQVWAPVKSGGKFVLSTSGQPFFLDSQSNGLHQYRMASLTFMFSLDADQDGYLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLSHALNYNVQGTLALPVFDPSGHSCLGVLELIMTSPKINYAPEVDKVCKALEAVNLKSSEILDHPNNQIQSWQCLSNQICNEGRQNALAEILEVLTVVCETHNLPLAQTWVPCRHRNVLAYGGGLKKSCTSFDGSCMGRICMSATEVASYVVDAHMWGFRDACLEHHLQKGQGVSGRAFLSHSSCFCGDITQFCKTEYPLVHYALMFGLKSCFSICLRSTFTGDDEYILEFFLPPSIVDYQEQKNLLGALMATMKKHFYTLKVASGINLEDKEGFVEIIQASRNGGFDSRLEYIQIPQPVELPPASDAMPKAVEVAALETLQQQSLMVHDAPKDENNGAWDGESHKPVPCPQNKEVKKTSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGISSLATSPLPVTVSSSSHPLTPEGSNQQNFVASQPSDSQYKETNTSEAQTNDTQARLEDQLHRGVLSPEEPIHEQNGFLPKFGNGLNNFRTGSGSREESAGTPTSHGSCQGSPANDSALANNPISIPQHEQCVRRESPEVAFHPIDKLNVSAPACSIPDTLVMVEPEEPFGGMLIEDAGSSKDLKNLCASVADAVLDEPVPEFCWSNHHDIALRQPMDSICHTVPHISLRQEPRRMTIKATYKEDIIRFRIPLSSGIVELREEVAKRLKLEVGTFDIKYIDDDREWVLIACDADLQECVDISKSSGSNIIRLSVHDLNVNLGSSCESTGE 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21065003 21069575 - MELO3C016260.2.1 Cme07g01523 333539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01523 1002 SUPERFAMILY CAD & PB1 domains 901 989 - -
Cme07g01523 1002 Pfam RWP-RK domain 602 650 IPR003035 -
Cme07g01523 1002 CDD PB1_NLP 908 988 IPR034891 -
Cme07g01523 1002 MobiDBLite consensus disorder prediction 563 598 - -
Cme07g01523 1002 MobiDBLite consensus disorder prediction 580 598 - -
Cme07g01523 1002 Pfam PB1 domain 908 988 IPR000270 GO:0005515
Cme07g01523 1002 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 22 1000 - -
Cme07g01523 1002 MobiDBLite consensus disorder prediction 749 794 - -
Cme07g01523 1002 ProSiteProfiles PB1 domain profile. 907 989 IPR000270 GO:0005515
Cme07g01523 1002 MobiDBLite consensus disorder prediction 683 725 - -
Cme07g01523 1002 Gene3D - 905 988 - -
Cme07g01523 1002 MobiDBLite consensus disorder prediction 1 27 - -
Cme07g01523 1002 ProSiteProfiles RWP-RK domain profile. 589 670 IPR003035 -
Cme07g01523 1002 SMART PB1_new 907 989 IPR000270 GO:0005515
Cme07g01523 1002 MobiDBLite consensus disorder prediction 758 794 - -
Cme07g01523 1002 PANTHER PROTEIN NLP8 22 1000 IPR045012 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01523 - - - csv:101212500 1993.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00054 Cme-Chr7:347490 Cme07g01523 Cme-Chr7:21065003 1.57E-12 dispersed
Cme07g01523 Cme-Chr7:21065003 Cme07g01966 Cme-Chr7:24744567 8.15E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g190 . . Bda06g00162 . Bpe05g00708 Bpe07g00057 . . Cmo06g00603 Cmo16g00577 . . . . . Cpe14g00447 . . . . . . . . Cla07g01080 Cam07g1420 Cec07g1236 Cco07g1216 Clacu07g1141 Cmu07g1123 Cre07g1500 . . . . . . . Cme07g01523 . . . . . . . . . . . Cma06g00596 Cma16g00528 . . . . . . . . . . . . . . . . . . . . Chy07g01125 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme07g01523 . 186 1002 NLP Transcription Factor Family AT1G64530 51.2 7.1e-216 747.3
Cme07g01523 . 265 1002 NLP Transcription Factor Family AT4G24020 54.5 1.0e-198 690.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41658 PF00564 PB1 4.80E-19 CL0072 Cme TF