Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme07g01524 ATGGGAATTGGGTCGGATCCGGCCCAAAATGGAGCCCTAAAGAAAGTGAAATTCCTTCTTGAAGAACAAGTAAAGAGTGCAACAAAGGTGACCATTTCCAATTTCAGCAAACAGATTCAGAGGAGGAAATTGAAGAAGAAGATCGCCATGGATCCGAAGCTAACTGAGGTCTCTCAGCACTTCGAGCGCTTCAAAGCTGCTCTTGTTAGACACGATTACGATTCTTGTAACAATCTCCTCTCTCAGCTCAAGGTTTTTTTGACTGGATTCAGAAGTCTTCCACCATTGTTTGAAGATACGCCCAATGCTGTCCATGAATTGACGATAGCTAGGGATATATATGAGCATGCTGTGTTGCTTAGTGTGAAGGTTGAAGATCAAGATGCATTTGAAAGAGATTTCTTCCAATTGAAGCCTTACTATACTGATGCTCGTAACCGCCTTCCTCCATCCCCTCAGGAGTATCCCATCTTGGGTCTCAACCTTTTGAGGCTTCTTGTCCAGAACAGAATTGCTGAATTCCATACGGAACTTGAACTTCTTTCCACCTCTGCTTTGGAGAACCCATGCATTAAACATGCTGTGGAGCTGGAGCAATCCTTCATGGAAGGGGCTTACAACCGTGTGTTGAGTGCTCGACAGACTGTGCCACATGAAACTTATGGTTATTTCATGGACCTCCTTGCAAAGACTGTAAGAGATGAAATAGCCGGTTGCAGTGAGAAGGCATATGATTATCTTTCAATAAATGATGCACGCCAAATGCTGTTGTTTTCCTCTGACCAGGAACTTTTGGACTACGTCAAGGAGGAGCATCCTGAGTGGGAGATAACGAATGGCGTCGTATATTTCCAGAAGGCGAAAGAATCTGCACCATGCAAGGAAATACCATCTCTTCAACTTATCAACCAAACACTCAGTTACGCAAGAGAGTTGGAGCGAATTGTATGA 951 43.95 MGIGSDPAQNGALKKVKFLLEEQVKSATKVTISNFSKQIQRRKLKKKIAMDPKLTEVSQHFERFKAALVRHDYDSCNNLLSQLKVFLTGFRSLPPLFEDTPNAVHELTIARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDARNRLPPSPQEYPILGLNLLRLLVQNRIAEFHTELELLSTSALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETYGYFMDLLAKTVRDEIAGCSEKAYDYLSINDARQMLLFSSDQELLDYVKEEHPEWEITNGVVYFQKAKESAPCKEIPSLQLINQTLSYARELERIV 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21080767 21084481 - MELO3C016262.2.1 Cme07g01524 333540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme07g01524 316 Pfam CSN8/PSMD8/EIF3K family 155 291 IPR033464 -
Cme07g01524 316 Gene3D - 53 287 - -
Cme07g01524 316 PANTHER BNACNNG39010D PROTEIN 50 316 - -
Cme07g01524 316 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8 50 316 IPR006746 GO:0005838|GO:0006508
Cme07g01524 316 ProSiteProfiles PCI domain profile. 128 300 IPR000717 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme07g01524 K03031 PSMD8, RPN12; 26S proteasome regulatory subunit N12 - csv:101207684 500.745
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g186 . Blo03g00260 Bda06g00160 Bda08g00452 . Bpe07g00058 . . . Cmo16g00578 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0869 Cone9ag0875 . . . Cme07g01524 . . . . . . Bma05g00889 Bma12g00619 . . . . Cma16g00529 . . . . . . . . . . . . . . . . . . . Csa04g00683 Chy07g01126 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007132 3 1 1 2 1 1 2 1 1 1 0 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 1 1 37